Wagner Lab Research

University of Zurich

Institute of
Evolutionary Biology and Environmental Studies

Research


 

The origins of evolutionary innovations

The history of life is a four billion year long history of evolutionary innovations, qualitatively new traits that benefit their carrier and provide platforms of further evolutionary change. Eyes, flowers, and limbs are but few examples of innovations that transformed life once they were fully formed. Each of them was built on many microscopic, submicroscopic, and molecular changes, some of which were innovations in their own right. We know myriad evolutionary innovations, fascinating case stories of natural history, but we know much less about general principles that allow life to innovate. Beyond the well-worn notion that a combination of natural selection and mutation is necessary, we do not even know whether such principles exist.

Most if not all evolutionary innovations have their roots in molecular changes that affect three classes of biological systems. These are metabolic networks, regulatory circuits, and macromolecules, especially protein and RNA. We study these system classes separately, through a combination of comparative data analysis, computational modeling, and laboratory evolution, to identify common principles that underlie their ability to bring forth innovation.

This line of work has lead us to identify several principles important for innovation. These principles form the basis of a theory of innovation that integrates recent knowledge about complex molecular phenotypes with more traditional Darwinian thinking. These principles can unify very different kinds of innovations, and capture several known features of biological innovation. They help explain the role of environmental change, and of an organism's robustness to such change in innovation. We study how these principles can help us reconcile neutralism and selectionism, as well as explain the role of phenotypic plasticity, gene duplication, recombination, and cryptic variation in innovation. Finally, we also ask whether these principles apply to technological innovation, and thus open to human engineering the powers of biological innovation.

 

Selected Publications

Barve, A., Wagner, A. (2013) A latent capacity for evolutionary innovation through exaptation in metabolic systems. Nature 500, 203-206. [link]

Wagner, A.(2011) The origins of evolutionary innovations. Oxford University Press. [OUP]

Hayden, E.J., Ferrada, E., Wagner, A. (2011) Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme. Nature 474, 92-95. [link]

Raman, K., Wagner, A. (2011) The evolvability of programmable hardware. Journal of the Royal Society Interface 8: 269-281. [reprint request]

Rodrigues, J., Wagner, A. (2009) Evolutionary plasticity and innovations in complex metabolic reaction networks. PloS Computational Biology 5(12): e1000613. [reprint request]

Ferrada, E., Wagner, A. (2010) Evolutionary innovations and the organization of protein functions in genotype space. PLoS ONE 5(11): e14172. doi:10.1371/journal.pone.0014172. [reprint request]

Ciliberti, S., Martin, OC, Wagner, A. (2007) Innovation and robustness in complex regulatory gene networks. Proc. Natl. Acad. Sci. U.S.A. 104, 13591-13596. [reprint request]