#An example file for when E-values are desired
#but alignments are not allowed to overlap

#Kappa parameter for E-value calculation	
k = 0.138

#lambda parameter for E-value calculation	
lambda = 0.6	 

#Query Length
mlen = 333	

#DB Length
nlen = 7177762

#These are protein sequences
protein


Begin Alignments
A0	1	69 	287 
A1	67	52	394
A2	60	123	300
A3	1	66 	354
A4	111	62 	267
A5	174	35	120