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java.lang.Objectsbrt.kernel.fba.analysis.FluxIntervalAnalyzer
public class FluxIntervalAnalyzer
This class is used to analyze flux intervals.
The zeroCutoff
arguments to each method must be:
Double.NaN
.
Constructor Summary | |
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FluxIntervalAnalyzer()
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Method Summary | |
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java.util.Set<java.lang.String> |
getAlwaysActive(java.util.Map<java.lang.String,Interval> fluxIntervals,
double zeroCutoff)
Returns the always-active fluxes in the provided map. |
java.util.Set<java.lang.String> |
getNeverActive(java.util.Map<java.lang.String,Interval> fluxIntervals,
double zeroCutoff)
Returns the never-active fluxes in the provided map. |
java.util.Set<java.lang.String> |
getPotentiallyActive(java.util.Map<java.lang.String,Interval> fluxIntervals,
double zeroCutoff)
Returns the potentially-active fluxes in the provided map. |
int |
lowerBoundsEqualZero(java.util.Collection<Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose lower bound equals zero. |
int |
lowerBoundsEqualZero(java.util.Map<?,Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose lower bound equals zero. |
int |
lowerBoundsGreaterThanZero(java.util.Collection<Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose lower bounds are greater than zero. |
int |
lowerBoundsGreaterThanZero(java.util.Map<?,Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose lower bounds are greater than zero. |
int |
rangesEqualZero(java.util.Collection<Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose ranges equal zero. |
int |
rangesEqualZero(java.util.Map<?,Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose ranges equal zero. |
int |
rangesGreaterThanZero(java.util.Collection<Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose ranges are greater than zero. |
int |
rangesGreaterThanZero(java.util.Map<?,Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose ranges are greater than zero. |
int |
upperBoundsEqualZero(java.util.Collection<Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose upper bounds equal zero. |
int |
upperBoundsEqualZero(java.util.Map<?,Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose upper bounds equal zero. |
int |
upperBoundsGreaterThanZero(java.util.Collection<Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose upper bounds are greater than zero. |
int |
upperBoundsGreaterThanZero(java.util.Map<?,Interval> intervals,
double zeroCutoff)
Returns the number of provided intervals whose upper bounds are greater than zero. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public FluxIntervalAnalyzer()
Method Detail |
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public java.util.Set<java.lang.String> getAlwaysActive(java.util.Map<java.lang.String,Interval> fluxIntervals, double zeroCutoff)
fluxIntervals
- reaction names mapped to their corresponding flux interval.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public java.util.Set<java.lang.String> getPotentiallyActive(java.util.Map<java.lang.String,Interval> fluxIntervals, double zeroCutoff)
fluxIntervals
- reaction names mapped to their corresponding flux interval.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public java.util.Set<java.lang.String> getNeverActive(java.util.Map<java.lang.String,Interval> fluxIntervals, double zeroCutoff)
fluxIntervals
- reaction names mapped to their corresponding flux interval.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int lowerBoundsEqualZero(java.util.Map<?,Interval> intervals, double zeroCutoff)
intervals
- a map whose values are intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int lowerBoundsEqualZero(java.util.Collection<Interval> intervals, double zeroCutoff)
intervals
- a collection of intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int lowerBoundsGreaterThanZero(java.util.Map<?,Interval> intervals, double zeroCutoff)
intervals
- a map whose values are intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int lowerBoundsGreaterThanZero(java.util.Collection<Interval> intervals, double zeroCutoff)
intervals
- a collection of intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int upperBoundsEqualZero(java.util.Map<?,Interval> intervals, double zeroCutoff)
intervals
- a map whose values are intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int upperBoundsEqualZero(java.util.Collection<Interval> intervals, double zeroCutoff)
intervals
- a collection of intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int upperBoundsGreaterThanZero(java.util.Map<?,Interval> intervals, double zeroCutoff)
intervals
- a map whose values are intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int upperBoundsGreaterThanZero(java.util.Collection<Interval> intervals, double zeroCutoff)
intervals
- a collection of intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int rangesEqualZero(java.util.Map<?,Interval> intervals, double zeroCutoff)
intervals
- a map whose values are intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int rangesEqualZero(java.util.Collection<Interval> intervals, double zeroCutoff)
intervals
- a collection of intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int rangesGreaterThanZero(java.util.Map<?,Interval> intervals, double zeroCutoff)
intervals
- a map whose values are intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
public int rangesGreaterThanZero(java.util.Collection<Interval> intervals, double zeroCutoff)
intervals
- a collection of intervals.zeroCutoff
- the amount by which a value can differ from zero, but still be
considered equal to zero.
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