Uses of Class
sbrt.shell.io.TextOutputFile

Packages that use TextOutputFile
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.mng.graph_theory Provides classes and for creating graph theoretical process managers. 
 

Uses of TextOutputFile in sbrt.shell.io
 

Methods in sbrt.shell.io that return TextOutputFile
static TextOutputFile<java.lang.String> TextOutputFile.getBasic(java.lang.String fileName)
          Returns a basic text output file.
static TextOutputFile<java.lang.String> TextOutputFile.getBasic(java.lang.String fileName, FileFormat fileFormat)
          Returns a basic text output file with the provided file format.
 

Uses of TextOutputFile in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return TextOutputFile
static TextOutputFile<LinearComb<java.lang.String>> RandomObjectiveManager.getOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing randomly generated objective functions.
static TextOutputFile<LinearComb<java.lang.String>> RandomObjectiveManager.getOutputFile(java.lang.String fileName, FileFormat format, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing randomly generated objective functions.
 

Uses of TextOutputFile in sbrt.shell.mng.graph_theory
 

Methods in sbrt.shell.mng.graph_theory that return TextOutputFile
static TextOutputFile<java.util.List<java.lang.String>> CycleIdManager.getOutputFile(ManagerInput<java.lang.String,java.lang.String> input)
          Creates a returns an output file if one is specified in the provided input.
static TextOutputFile<java.util.List<java.lang.String>> CycleIdManager.getOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out)
          Creates a returns an output file if one is specified in the provided input.