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U

UnboundedVariableException - Exception in sbrt.kernel.math
This class is used to indicate that a variable is unbounded.
UnboundedVariableException(Object) - Constructor for exception sbrt.kernel.math.UnboundedVariableException
Constructs a new exception from the provided unbounded variable.
unchangedFreeVariables() - Method in class sbrt.kernel.fba.comp.CdHarFluxComp.Results
Returns the number of free variables whose values are the same as they were in the initial flux vector.
unchangedVariables() - Method in class sbrt.kernel.math.geom.comp.CdHarComp.Results
Returns the number of variables whose values are the same as they were in the previous point.
UniqueCycleIdManager - Class in sbrt.shell.mng.graph_theory
This class is used to identify the unique cycles in files that contain collections of cycles.
UniqueCycleIdManager() - Constructor for class sbrt.shell.mng.graph_theory.UniqueCycleIdManager
 
unlock(Object) - Static method in class sbrt.ext.R.R
Unlocks the R engine so that others have access, that is, someone can request a new key.
UnmodifiableCollection<E> - Class in sbrt.kernel.utilities
This class is used to create an unmodifiable view of collections.
UnmodifiableCollection(Collection<E>) - Constructor for class sbrt.kernel.utilities.UnmodifiableCollection
Constructs a new unmodifiable view of the provided collection.
UnmodifiableIterator<E> - Class in sbrt.kernel.utilities
This class is used to create an iterator that cannot modify its underlying collection.
UnmodifiableIterator(Iterator<E>) - Constructor for class sbrt.kernel.utilities.UnmodifiableIterator
Constructs a new unmodifiable iterator from the provided iterator.
UnmodifiableList<E> - Class in sbrt.kernel.utilities
This class is used to create an unmodifiable view of lists.
UnmodifiableList(List<E>) - Constructor for class sbrt.kernel.utilities.UnmodifiableList
Constructs a new unmodifiable view of the provided list.
UnmodifiableMap<K,V> - Class in sbrt.kernel.utilities
This class is used to create an unmodifiable view of maps.
UnmodifiableMap(Map<? extends K, ? extends V>) - Constructor for class sbrt.kernel.utilities.UnmodifiableMap
Constructs a new unmodifiable view of the provided map.
UnmodifiableSet<E> - Class in sbrt.kernel.utilities
This class is used to create an unmodifiable view of sets.
UnmodifiableSet(Set<E>) - Constructor for class sbrt.kernel.utilities.UnmodifiableSet
Constructs a new unmodifiable view of the provided set.
upperBoundsEqualZero(Map<?, Interval>, double) - Method in class sbrt.kernel.fba.analysis.FluxIntervalAnalyzer
Returns the number of provided intervals whose upper bounds equal zero.
upperBoundsEqualZero(Collection<Interval>, double) - Method in class sbrt.kernel.fba.analysis.FluxIntervalAnalyzer
Returns the number of provided intervals whose upper bounds equal zero.
upperBoundsGreaterThanZero(Map<?, Interval>, double) - Method in class sbrt.kernel.fba.analysis.FluxIntervalAnalyzer
Returns the number of provided intervals whose upper bounds are greater than zero.
upperBoundsGreaterThanZero(Collection<Interval>, double) - Method in class sbrt.kernel.fba.analysis.FluxIntervalAnalyzer
Returns the number of provided intervals whose upper bounds are greater than zero.
USAGE - Static variable in class sbrt.Sbrt
Indicates the typical way in which this program is called from the command line.
Util - Class in sbrt.kernel.utilities
This class contains static methods that perform utility functions.

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