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Packages that use Or | |
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sbrt.kernel.fba | Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
sbrt.shell.text | Provides classes and interfaces for defining formats for basic objects. |
sbrt.shell.text.fba | Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. |
Uses of Or in sbrt.kernel.fba |
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Methods in sbrt.kernel.fba that return Or | |
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Or<And<java.lang.String>> |
MixedFluxomeV1.getCatalystRule(java.lang.String rxnName)
Returns the boolean logic statement for the catalysts of the reaction with the provided name. |
Or<And<java.lang.String>> |
IrrevRxnFluxome.getCatalystRule(java.lang.String rxnName)
Returns the boolean logic statement for the catalysts of the reaction with the provided name. |
Or<And<java.lang.String>> |
IrrevRxnFluxomeV1.getCatalystRule(java.lang.String rxnName)
Returns the boolean logic statement for the catalysts of the reaction with the provided name. |
Or<And<java.lang.String>> |
MixedFluxome.getCatalystRule(java.lang.String rxnName)
Returns the boolean logic statement for the catalysts of the reaction with the provided name. |
Methods in sbrt.kernel.fba that return types with arguments of type Or | |
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java.util.Map<java.lang.String,Or<And<java.lang.String>>> |
MixedFluxomeV1.getCatalystRules()
Returns all of the boolean logic statements regarding reaction catalysis. |
java.util.Map<java.lang.String,Or<And<java.lang.String>>> |
IrrevRxnFluxome.getCatalystRules()
Returns all of the boolean logic statements regarding reaction catalysis. |
java.util.Map<java.lang.String,Or<And<java.lang.String>>> |
IrrevRxnFluxomeV1.getCatalystRules()
Returns all of the boolean logic statements regarding reaction catalysis. |
java.util.Map<java.lang.String,Or<And<java.lang.String>>> |
MixedFluxome.getCatalystRules()
Returns all of the boolean logic statements regarding reaction catalysis. |
Constructor parameters in sbrt.kernel.fba with type arguments of type Or | |
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IrrevRxnFluxomeV1(java.util.Map<java.lang.String,? extends ChemRxn> rxns,
java.util.Map<java.lang.String,Or<And<java.lang.String>>> catalysts)
Constructs a new irreversible reaction fluxome from the provided internal and exchange reactions and catalysts. |
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IrrevRxnFluxomeV1(java.util.Map<java.lang.String,IrrevRxn> internalRxns,
java.util.Map<java.lang.String,SourceRxn> sourceRxns,
java.util.Map<java.lang.String,SinkRxn> sinkRxns,
java.util.Map<java.lang.String,Or<And<java.lang.String>>> catalysts)
Constructs a new irreversible reaction fluxome from the provided internal and exchange reactions and catalysts. |
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MixedFluxomeV1(java.util.Map<java.lang.String,? extends ChemRxn> rxns,
java.util.Map<java.lang.String,Or<And<java.lang.String>>> catalysts)
Constructs a new mixed fluxome from the provided internal and exchange reactions and catalysts. |
Uses of Or in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return types with arguments of type Or | |
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static java.util.Map<java.lang.String,Or<And<java.lang.String>>> |
FbaManager.getCatalysts(Fluxome fluxome,
java.lang.String fileName)
Returns the reaction-catalyst associations contained in the file with the provided name. |
static java.util.Map<java.lang.String,Or<And<java.lang.String>>> |
FbaManager.getCatalysts(Fluxome fluxome,
java.lang.String fileName,
java.io.PrintWriter out)
Returns the reaction-catalyst associations contained in the file with the provided name. |
Uses of Or in sbrt.shell.text |
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Methods in sbrt.shell.text that return Or | |
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Or<And<E>> |
BoolRelFormatV1.parse(java.lang.String set)
Parses the provided string and returns its corresponding collection of elements as a LinkedHashSet . |
Methods in sbrt.shell.text with parameters of type Or | |
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java.lang.String |
BoolRelFormatV1.format(Or<And<E>> boolRel)
Returns a formatted string representation of the provided boolean relationship. |
Uses of Or in sbrt.shell.text.fba |
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Methods in sbrt.shell.text.fba that return Or | |
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Or<And<java.lang.String>> |
PalssonRxnNodeParser.getCatalysts(org.w3c.dom.Node reactionNode,
java.lang.String prefix)
Returns the boolean logic rules for the catalysts of the provided reaction node. |
Or<And<java.lang.String>> |
BiggRxnNodeParser.getCatalysts(org.w3c.dom.Node reactionNode,
java.lang.String prefix)
Returns the boolean logic rules for the catalysts of the provided reaction node. |
Or<And<java.lang.String>> |
PalssonRxnNodeParser.getGenes(org.w3c.dom.Node reactionNode)
Calls PalssonRxnNodeParser.getCatalysts(Node, String) with " GENE_ASSOCIATION: "
as the prefix . |
Or<And<java.lang.String>> |
BiggRxnNodeParser.getGenes(org.w3c.dom.Node reactionNode)
Calls BiggRxnNodeParser.getCatalysts(Node, String) with " GENE ASSOCIATION: "
as the prefix . |
Or<And<java.lang.String>> |
PalssonRxnNodeParser.getProteins(org.w3c.dom.Node reactionNode)
Calls PalssonRxnNodeParser.getCatalysts(Node, String) with " PROTEIN_ASSOCIATION: "
as the prefix . |
Or<And<java.lang.String>> |
BiggBracketParserV1.parse(java.lang.String string)
Parses the provided BiGG style bracketed expression. |
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