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Packages that use TextInputFile | |
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sbrt.shell.io | Provides classes and interfaces for reading and writing files. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng | Provides classes and interfaces for creating process managers. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of TextInputFile in sbrt.shell.io |
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Methods in sbrt.shell.io that return TextInputFile | |
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static TextInputFile<java.lang.String> |
TextInputFile.getBasic(java.lang.String fileName)
Returns a basic text input file. |
static TextInputFile<java.lang.String> |
TextInputFile.getBasic(java.lang.String fileName,
FileFormat fileFormat)
Returns a basic text input file. |
Constructors in sbrt.shell.io with parameters of type TextInputFile | |
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TextFileLineIterator(TextInputFile<E> file)
Constructs a new text file line iterator using the provided text input file. |
Uses of TextInputFile in sbrt.shell.io.fba |
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Subclasses of TextInputFile in sbrt.shell.io.fba | |
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class |
RxnNamExprSetInputFile<E extends MathExpr<S>,S>
This class is used to read files containing a set of reaction name expressions. |
Uses of TextInputFile in sbrt.shell.mng |
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Methods in sbrt.shell.mng that return TextInputFile | |
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static TextInputFile<java.lang.String> |
AbstractProcessManager.getFileNameSource(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out)
Returns the parsed value for AbstractProcessManager.OUTPUT_FILE_NAME_FILE in the provided input and prints a descriptive message to the provided print writer. |
Uses of TextInputFile in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return TextInputFile | |
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static TextInputFile<LinearComb<java.lang.String>> |
ObjectiveFunctionManager.getInputFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns the file denoted by ObjectiveFunctionManager.OBJ_FUNCT_FILE in the provided manager input. |
static TextInputFile<LinearComb<java.lang.String>> |
ObjectiveFunctionManager.getInputFile(java.lang.String fileName,
FileFormat format,
Fluxome fluxome)
Returns the input file with the provided name. |
static TextInputFile<LinearComb<java.lang.String>> |
ObjectiveFunctionManager.getInputFile(java.lang.String fileName,
Fluxome fluxome)
Returns the input file with the provided name. |
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