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Packages that use sbrt.shell.text.fba | |
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sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
sbrt.shell.proc.fba | Provides classes for converting FBA-related files of different formats. |
sbrt.shell.text.fba | Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. |
Classes in sbrt.shell.text.fba used by sbrt.shell.io.fba | |
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FbaOptFileLineFormat
This interface is used to represent formats of FBA optimization file lines. |
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FluxCapFormat
This interface is used to represent the formats of lines of flux cap-containing files. |
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RxnNameExprFormat
This interface is used to represent formats for mathematical expressions of reaction names. |
Classes in sbrt.shell.text.fba used by sbrt.shell.mng.fba | |
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RxnNameExprFormat
This interface is used to represent formats for mathematical expressions of reaction names. |
Classes in sbrt.shell.text.fba used by sbrt.shell.proc.fba | |
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IrrevRxnFormatV2
This class is used to format irreversible reactions for use in flux balance analysis. |
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RevRxnFormatV2
This class is used to format reversible reactions for use in flux balance analysis. |
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RxnFormatV1
This class is used to format reactions for use in flux balance analysis. |
Classes in sbrt.shell.text.fba used by sbrt.shell.text.fba | |
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CatalystListFormat
This interface is used to represent the formats of lists of catalyst names. |
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CatalystSetFormat
This interface is used to represent the formats of sets of enzyme names. |
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CatalystVerifier
This class is used to ensure catalysts exist in a given CatalyzedFluxome . |
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ConstraintsFileLineFormat
This interface is used to represent formats for flux constraints files. |
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FbaOptFileLineFormat
This interface is used to represent formats of FBA optimization file lines. |
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FbaOptHeaderFormatter
This interface is used to represent formatters for headers used in writing files of FBA optimization data. |
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FbaOptHeaderParser
This interface is used to represent parsers for headers used in writing files of FBA optimization data. |
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FluxCapFormat
This interface is used to represent the formats of lines of flux cap-containing files. |
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FluxomeSolutionFileLineFormat
This interface is used to represent formats for solutions to the linear system of equations formed by a fluxome. |
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FluxVectorFormat
This interface is used to represent formats for flux vectors. |
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IrrevRxnFormatV1
This class is used to format irreversible reactions for use in flux balance analysis. |
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RevRxnFormatV1
This class is used to format reversible reactions for use in flux balance analysis. |
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RxnFormatV1
This class is used to format reactions for use in flux balance analysis. |
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RxnNameExprFormat
This interface is used to represent formats for mathematical expressions of reaction names. |
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RxnNameExprFormatV1
This class is used to format linear combinations of reaction names. |
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RxnNameListFormat
This interface is used to represent the formats of collections of reaction names. |
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RxnNameOrExprFormat
This interface is used to represent formats for reaction names and mathematical expressions of reaction names. |
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RxnNameSetFormat
This interface is used to represent the formats of collections of reaction names. |
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RxnNameSetFormatV1
This class is a concrete implemenation of RxnNameSetFormat. |
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RxnNameVerifier
This class is used to ensure reaction names exist in a given Fluxome . |
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