Uses of Interface
sbrt.shell.io.fba.FbaOptOutputFile

Packages that use FbaOptOutputFile
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of FbaOptOutputFile in sbrt.shell.io.fba
 

Classes in sbrt.shell.io.fba that implement FbaOptOutputFile
 class ColumnOrFbaOptOutputFile<F extends Fluxome>
          This class is used to write column-oriented output files containing FBA optimization data.
 class RowOrFbaOptOutputFile<F extends Fluxome>
          This class is used to write row-oriented output files containing FBA optimization data.
 class SerFbaOptOutputFile<F extends Fluxome>
          This class is used to write output files containing FBA optimization data as serialized maps.
 

Uses of FbaOptOutputFile in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return FbaOptOutputFile
static
<F extends Fluxome>
FbaOptOutputFile<F>
FbaOptManager.getMultiResultsOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, F fluxome)
          Returns an empty output file that is suitable for storing multiple FBA optimization results.
static
<F extends Fluxome>
FbaOptOutputFile<F>
FbaOptManager.getMultiResultsOutputFile(java.lang.String fileName, FileFormat fileFormat, java.util.Set<java.lang.String> dataHeaders, F fluxome)
          Returns an empty output file that is suitable for storing multiple FBA optimization results.
static
<F extends Fluxome>
FbaOptOutputFile<F>
FbaOptManager.getSingleResultOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, F fluxome)
          Returns an empty output file that is suitable for storing a single FBA optimization result.
static
<F extends Fluxome>
FbaOptOutputFile<F>
FbaOptManager.getSingleResultOutputFile(java.lang.String fileName, FileFormat fileFormat, java.util.Set<java.lang.String> dataHeaders, F fluxome)
          Returns an empty output file that is suitable for storing a single FBA optimization result.
 

Methods in sbrt.shell.mng.fba that return types with arguments of type FbaOptOutputFile
static
<F extends Fluxome>
MultiOutputFiles<? extends FbaOptOutputFile<F>,FbaOptimizer.Results>
FbaOptManager.getMultiFileOutput(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, F fluxome)
          Returns a source of FBA optimization output files.