Uses of Interface
sbrt.kernel.math.algebra.LinearSystemSolution

Packages that use LinearSystemSolution
sbrt.ext.mma.algebra Provides classes that allow communication with Mathematica for the purposes of algebra. 
sbrt.kernel.fba.comp Provides classes and interfaces for performing Flux Balance Analysis computations. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.kernel.math.algebra Provides classes and interfaces for creating objects relevant to algebra. 
sbrt.kernel.math.algebra.proc Provides classes and interfaces for executing algebra-related processes. 
sbrt.kernel.math.geom Provides classes and interfaces for creating objects relevant to computational geometry. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of LinearSystemSolution in sbrt.ext.mma.algebra
 

Methods in sbrt.ext.mma.algebra that return LinearSystemSolution
 LinearSystemSolution<V> MathematicaSolver.solve(java.util.Map<LinearComb<V>,java.lang.Double> equations)
          Computes and returns a solution to the provided system of linear equations.
 

Uses of LinearSystemSolution in sbrt.kernel.fba.comp
 

Methods in sbrt.kernel.fba.comp that return LinearSystemSolution
static LinearSystemSolution<java.lang.String> FbaSolver.solve(Fluxome fluxome, LinearSystemSolver<java.lang.String> solver)
          Solves Sv = 0, where S is the stoichiometry matrix of the provided fluxome and v is the vector of fluxes.
 

Constructors in sbrt.kernel.fba.comp with parameters of type LinearSystemSolution
CdHarFluxComp(F fluxome, LinearSystemSolution<java.lang.String> systemSolution)
          Constructs a new random flux vector computer for the provided fluxome.
 

Uses of LinearSystemSolution in sbrt.kernel.fba.proc
 

Method parameters in sbrt.kernel.fba.proc with type arguments of type LinearSystemSolution
 void FbaSolverProcess.run(ResultsManager<LinearSystemSolution<java.lang.String>> resultsManager)
          Solves Sv = 0 and adds the result to the provided manager.
 

Uses of LinearSystemSolution in sbrt.kernel.math.algebra
 

Classes in sbrt.kernel.math.algebra that implement LinearSystemSolution
 class HashLinearSystemSolution<V>
          This class is a concrete implemenation of LinearSystemSolution.
 

Methods in sbrt.kernel.math.algebra that return LinearSystemSolution
static
<V> LinearSystemSolution<V>
HashLinearSystemSolution.simplify(LinearSystemSolution<V> solution, java.util.Map<? extends V,Interval> variableBounds, double tolerance)
          Returns a simplified version of the provided linear system solution given the variable bounds.
 LinearSystemSolution<V> HashLinearSystemSolution.simplify(java.util.Map<?,java.lang.Double> variableValues, double tolerance)
          Computes and returns a simplified solution by plugging in the provided values.
 LinearSystemSolution<V> LinearSystemSolution.simplify(java.util.Map<?,java.lang.Double> variableValues, double tolerance)
          Computes and returns a simplified solution by plugging in the provided values.
 LinearSystemSolution<V> LinearSystemSolver.solve(java.util.Map<LinearComb<V>,java.lang.Double> equations)
          Computes and returns a solution to the provided system of linear equations.
 

Methods in sbrt.kernel.math.algebra with parameters of type LinearSystemSolution
static
<V> LinearSystemSolution<V>
HashLinearSystemSolution.simplify(LinearSystemSolution<V> solution, java.util.Map<? extends V,Interval> variableBounds, double tolerance)
          Returns a simplified version of the provided linear system solution given the variable bounds.
 

Uses of LinearSystemSolution in sbrt.kernel.math.algebra.proc
 

Method parameters in sbrt.kernel.math.algebra.proc with type arguments of type LinearSystemSolution
 void LinearSolverProcess.run(ResultsManager<LinearSystemSolution<V>> resultsManager)
          Solves the system of linear equations and adds the solution to the provided results manager.
 

Uses of LinearSystemSolution in sbrt.kernel.math.geom
 

Methods in sbrt.kernel.math.geom with parameters of type LinearSystemSolution
static
<V> HashConvexPolytope<V>
HashConvexPolytope.make(LinearSystemSolution<V> systemSolution, java.util.Map<? extends V,Interval> variableBounds, double tolerance)
          Constructs a new convex poltyope from the provided linear system solution and variable bounds.
 

Uses of LinearSystemSolution in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return LinearSystemSolution
static LinearSystemSolution<java.lang.String> FbaManager.getFluxomeSolution(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome, double coeffCutoff)
          Opens the file denoted by FbaManager.SYSTEM_SOLUTION_FILE in the provided manager input and returns the linear system solution it contains.