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java.lang.Objectsbrt.kernel.fba.proc.FbaProcess<F,java.util.Map<java.lang.String,Interval>>
sbrt.kernel.fba.proc.FluxIntervalProcess<F>
F
- the fluxome type.public final class FluxIntervalProcess<F extends Fluxome>
This class is used to perform flux interval computations.
Constructor Summary | |
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FluxIntervalProcess(FluxIntervalComputer<F> computer)
Constructs a new flux interval process. |
Method Summary | |
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F |
getFluxome()
Returns the fluxome used in this proces. |
ProgressMonitor |
getProgress()
Returns a progress monitor for this process. |
void |
run(ResultsManager<java.util.Map<java.lang.String,Interval>> resultsManager)
Computes the flux intervals of the reactions with the current names and adds them to the provided results manager. |
void |
setReactionNames(java.util.Set<java.lang.String> reactionNames)
Sets the names of reactions for which flux ranges are to be computed. |
Methods inherited from class sbrt.kernel.fba.proc.FbaProcess |
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toString |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public FluxIntervalProcess(FluxIntervalComputer<F> computer)
computer
- the computer with which all flux intervals will be computed.Method Detail |
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public void setReactionNames(java.util.Set<java.lang.String> reactionNames)
reactionNames
- the names of reactions for which flux intervals are
to be computed.public F getFluxome()
getFluxome
in class FbaProcess<F extends Fluxome,java.util.Map<java.lang.String,Interval>>
public ProgressMonitor getProgress()
getProgress
in interface MonitoredProcess<java.util.Map<java.lang.String,Interval>>
public void run(ResultsManager<java.util.Map<java.lang.String,Interval>> resultsManager)
run
in interface KernelProcess<java.util.Map<java.lang.String,Interval>>
resultsManager
- the results manager to which the computed
flux intervals will be added.
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