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java.lang.Objectsbrt.kernel.fba.proc.FbaProcess<F,FluxPlasticityProcess.Results>
sbrt.kernel.fba.proc.FluxPlasticityProcess<F>
F
- the fluxome type.public final class FluxPlasticityProcess<F extends Fluxome>
This class is used to analyze the plasticity of fluxes.
Nested Class Summary | |
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static class |
FluxPlasticityProcess.Results
This class is used to represent the results of a flux plasticity process. |
Constructor Summary | |
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FluxPlasticityProcess(F fluxome)
Constructs a new flux plasticity process. |
Method Summary | |
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F |
getFluxome()
Returns the fluxome used in this flux plasticity process. |
ProgressMonitor |
getProgress()
Returns a progress monitor for this process. |
void |
run(ResultsManager<FluxPlasticityProcess.Results> resultsManager)
Iterates thru the flux interval source set via setFluxRangeSource(Iterable) , computes the flux plasticity
measures, and adds the results of each to the provided results manager. |
void |
setFluxIntervalSource(java.lang.Iterable<java.util.Map<java.lang.String,Interval>> intervalSource)
Sets the flux interval source. |
void |
setZeroCutoff(double zeroCutoff)
Sets the zero cutoff to the provided value. |
Methods inherited from class sbrt.kernel.fba.proc.FbaProcess |
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toString |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public FluxPlasticityProcess(F fluxome)
fluxome
- the fluxome for which flux plasticities will be determined.Method Detail |
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public F getFluxome()
getFluxome
in class FbaProcess<F extends Fluxome,FluxPlasticityProcess.Results>
public ProgressMonitor getProgress()
getProgress
in interface MonitoredProcess<FluxPlasticityProcess.Results>
public void setFluxIntervalSource(java.lang.Iterable<java.util.Map<java.lang.String,Interval>> intervalSource)
intervalSource
- a source of flux ranges, or constraints.public void setZeroCutoff(double zeroCutoff)
zeroCutoff
- the zero cutoff.public void run(ResultsManager<FluxPlasticityProcess.Results> resultsManager)
setFluxRangeSource(Iterable)
, computes the flux plasticity
measures, and adds the results of each to the provided results manager.
run
in interface KernelProcess<FluxPlasticityProcess.Results>
resultsManager
- the results manager to which each set of results is added.
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