sbrt.shell.proc.fba
Class MetatoolInputReader.Results

java.lang.Object
  extended by sbrt.shell.proc.fba.MetatoolInputReader.Results
Enclosing class:
MetatoolInputReader

public static class MetatoolInputReader.Results
extends java.lang.Object

This class is used to store the results of parsing a Metatool input file.

Author:
This class was written and documented by Jeremiah Wright while in the Wagner lab.

Method Summary
 java.util.Map<java.lang.String,ChemRxn> getCat()
          Returns the reactions that are listed in the -CAT section of the input file.
 java.util.List<java.lang.String> getEnzIrrev()
          Returns the reaction names that are listed in the -ENZIRREV section of the input file.
 java.util.List<java.lang.String> getEnzRev()
          Returns the reaction names that are listed in the -ENZREV section of the input file.
 java.util.List<java.lang.String> getMetExt()
          Returns the chemical species that are listed in the -METEXT section of the input file.
 java.util.List<java.lang.String> getMetInt()
          Returns the chemical species that are listed in the -METINT section of the input file.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Method Detail

getEnzRev

public java.util.List<java.lang.String> getEnzRev()
Returns the reaction names that are listed in the -ENZREV section of the input file.

Returns:
the reaction names that are listed in the -ENZREV section of the input file.

getEnzIrrev

public java.util.List<java.lang.String> getEnzIrrev()
Returns the reaction names that are listed in the -ENZIRREV section of the input file.

Returns:
the reaction names that are listed in the -ENZIRREV section of the input file.

getMetInt

public java.util.List<java.lang.String> getMetInt()
Returns the chemical species that are listed in the -METINT section of the input file.

Returns:
the reaction names that are listed in the -METINT section of the input file.

getMetExt

public java.util.List<java.lang.String> getMetExt()
Returns the chemical species that are listed in the -METEXT section of the input file.

Returns:
the reaction names that are listed in the -METEXT section of the input file.

getCat

public java.util.Map<java.lang.String,ChemRxn> getCat()
Returns the reactions that are listed in the -CAT section of the input file.

Returns:
reaction names mapped to their corresponding chemical reaction.