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Packages that use FbaOptComputer.Results | |
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sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of FbaOptComputer.Results in sbrt.kernel.fba.comp |
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Methods in sbrt.kernel.fba.comp that return FbaOptComputer.Results | |
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FbaOptComputer.Results |
RxnDeletionComputer.delete(java.util.Set<java.lang.String> rxnNames)
Computes and returns the results of deleting the reactions whose names appear in the provided set. |
FbaOptComputer.Results |
FbaOptComputer.getMax(MathExpr<?> objective)
Returns the results of computing the maximum value of the provided objective function. |
FbaOptComputer.Results |
FbaOptComputer.getMin(MathExpr<?> objective)
Returns the results of computing the minimum value of the provided objective function. |
FbaOptComputer.Results |
FbaOptComputer.getOptimal(MathExpr<?> objective,
OptimizationSense sense)
Returns the results of computing the optimal value of the provided objective function. |
FbaOptComputer.Results |
FbaOptComputer.getOptimal(java.lang.String reactionName,
OptimizationSense sense)
Returns the results of computing the optimal flux of the reaction with the provided name. |
Uses of FbaOptComputer.Results in sbrt.kernel.fba.proc |
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Method parameters in sbrt.kernel.fba.proc with type arguments of type FbaOptComputer.Results | |
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void |
CvFbaOptimizationExperiment.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object)
method. |
void |
ObjectiveFunctionAnalysis.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object)
method. |
void |
CatalystDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
RxnDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object)
method. |
void |
CvRxnDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
StoichVariationProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
CvObjectiveFunctionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
FbaOptimizationProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Computes the optimal value of the current objective function and adds the results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
CvCatalystDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
Uses of FbaOptComputer.Results in sbrt.shell.io.fba |
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Methods in sbrt.shell.io.fba with type parameters of type FbaOptComputer.Results | ||
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ColumnOrFbaOptOutputFile.addData(S results)
Writes the appropriate values in the provided FbaOptimizationComputer.Results to this file. |
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SerFbaOptOutputFile.addData(S results)
Writes the appropriate values in the provided FbaOptimizationComputer.Results to this file. |
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RowOrFbaOptOutputFile.addData(S results)
Writes the appropriate values in the provided FbaOptimizationComputer.Results to this file. |
Uses of FbaOptComputer.Results in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return types with arguments of type FbaOptComputer.Results | |
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static MultiOutputFiles<ColumnOrFbaOptOutputFile,FbaOptComputer.Results> |
FbaOptManager.getMultiColOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
Fluxome fluxome)
Please consult the source code for a complete description of this method's actions. |
static MultiOutputFiles<? extends FbaOptOutputFile,FbaOptComputer.Results> |
FbaOptManager.getMultiFileOutput(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
Fluxome fluxome)
Please consult the source code for a complete description of this method's actions. |
static MultiOutputFiles<RowOrFbaOptOutputFile,FbaOptComputer.Results> |
FbaOptManager.getMultiRowOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
Fluxome fluxome)
Please consult the source code for a complete description of this method's actions. |
static MultiOutputFiles<SerFbaOptOutputFile,FbaOptComputer.Results> |
FbaOptManager.getMultiSerOutputFiles(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
Fluxome fluxome)
Please consult the source code for a complete description of this method's actions. |
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