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Packages that use FbaProcess | |
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sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of FbaProcess in sbrt.kernel.fba.proc |
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Subclasses of FbaProcess in sbrt.kernel.fba.proc | |
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class |
AbstractCvFbaOptProcess<F extends Fluxome,R>
This class is used to represent constraint-variation Flux Balance Analysis processes. |
class |
CatalystDeletionProcess<F extends CatalyzedFluxome>
This class is used to perform catalyst deletion processes. |
class |
CdHarFluxVectorProcess<F extends Fluxome>
This class is used to perform coordinate direction hit-and-run flux vector processes. |
class |
CvCatalystDeletionProcess<F extends CatalyzedFluxome>
This class is used to perform constraint-variation catalyst deletion processes. |
class |
CvFbaOptProcess<F extends Fluxome>
This class is used to perform constraint-variation FBA optimization processes. |
class |
CvFluxIntervalProcess<F extends Fluxome>
This class is used to perform constraint variation flux interval processes. |
class |
CvObjectiveFunctionProcess<F extends Fluxome>
This class is used to perform constraint-variation objective function processes. |
class |
CvRxnDeletionProcess<F extends Fluxome>
This class is used to perform constraint-variation reaction deletion processes. |
class |
CycleIdProcess<F extends Fluxome>
This class is used to execute steady state cycle identification processes. |
class |
ExtremeCurrentProcess<F extends IrrevRxnFluxome>
This class is used to identify the extreme currents in stoichiometric networks. |
class |
FbaOptProcess<F extends Fluxome>
This class is used to perform a basic Flux Balance Analysis optimization. |
class |
FbaSolverProcess<F extends Fluxome>
This class is used to solve the equation Sv = 0. |
class |
FluxActivityProcess<F extends Fluxome>
This class is used to analyze the activity of fluxes. |
class |
FluxCapProcess
This class is used to perform a flux cap identification. |
class |
FluxIntervalProcess<F extends Fluxome>
This class is used to perform flux interval computations. |
class |
FluxomeReducerProcess<T extends Fluxome>
This class is used to execute fluxome reduction processes. |
class |
FluxPlasticityProcess<F extends Fluxome>
This class is used to analyze the plasticity of fluxes. |
class |
InitialPointGenerator<F extends Fluxome>
This class is used to execute initial point generators. |
class |
NetworkInfoProcess<F extends CatalyzedFluxome>
This class is used to gather basic information about a fluxome. |
class |
ObjFunAnalysis<F extends Fluxome>
This class is used to perform objective function analyses. |
class |
RandConstGeneratorV1<F extends Fluxome>
This class is used to generate random flux constraints. |
class |
RandomObjectiveGenerator<F extends Fluxome>
This class is used to generate random objective functions. |
class |
RedundRxnRemoverProcess
This class is used to remove redundant reactions from a fluxome. |
class |
RxnDeletionProcess<F extends Fluxome>
This class is used to perform reaction deletion processes. |
class |
SvCdHarFluxVectorProcess<F extends Fluxome>
This class is used to perform space variation coordinate direction hit-and-run flux vector processes. |
class |
SvInitialPointProcess<F extends Fluxome>
This class is used to perform flux space variation initial point processes. |
Uses of FbaProcess in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba with parameters of type FbaProcess | |
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static ApplicationException |
FbaOptManager.interpret(ConstraintViolationException e,
FbaProcess<?,?> process)
Returns an ApplicationException whose message describes the error
that ocurred. |
static ApplicationException |
FbaOptManager.interpret(FbaOptException e,
FbaProcess<?,?> process)
Returns an ApplicationException whose message describes the error
that ocurred. |
static ApplicationException |
InitialPointManager.interpret(FbaOptException e,
FbaProcess<?,?> process)
Returns an ApplicationException whose message describes the error
that ocurred. |
static ApplicationException |
MsFluxIntervalManager.interpret(FluxRangeException e,
FbaProcess<?,?> process)
Returns an ApplicationException whose message describes the error
that ocurred. |
static ApplicationException |
FbaOptManager.interpret(java.lang.RuntimeException e,
FbaProcess<?,?> process)
Returns an ApplicationException whose message describes the error
that ocurred. |
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