Uses of Package
sbrt.kernel.fba

Packages that use sbrt.kernel.fba
sbrt.kernel.fba Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. 
sbrt.kernel.fba.comp Provides classes and interfaces for performing Flux Balance Analysis computations. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.proc.fba Provides classes for converting FBA-related files of different formats. 
sbrt.shell.text.chem Provides classes and interfaces for defining formats for chemistry related objects. 
sbrt.shell.text.fba Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. 
 

Classes in sbrt.kernel.fba used by sbrt.kernel.fba
AbstractExchangeRxn
          This class is a skeleton implementation of ExchangeRxn.
AbstractRxn
          This class is a skeleton implementation of ChemicalRxn.
CatalyzedFluxome
          This interface is used to represent fluxomes with catalyzed reactions.
ChemRxn
          This interface is used to represent chemical reactions.
ExchangeRxn
          This interface is used to represent exchange reactions.
FluxConstraints
          This class is used to group sets of flux constraints.
Fluxome
          This interface is used to represent fluxomes for use in Flux Balance Analysis.
IrrevRxn
          This class is used to represent irreversible chemical reactions.
IrrevRxnFluxome
          This interface is used to represent fluxomes that contain only irreversible reactions.
IrrevRxnFluxomeV1
          This class is a concrete implementation of IrrevRxnFluxome.
MixedFluxome
          This interface is used to represent fluxomes that contain multiple types of chemical reactions.
MixedFluxomeV1
          This class is a concrete implementation of MixedFluxome.
RevExchRxn
          This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system.
RevRxn
          This class is used to represent reversible chemical reactions.
SinkRxn
          This class is used to represent exchange reactions that transport chemicals from a chemical system to its surroundings.
SourceRxn
          This class is used to represent exchange reactions that transport chemicals to a chemical system from its surroundings.
 

Classes in sbrt.kernel.fba used by sbrt.kernel.fba.comp
Fluxome
          This interface is used to represent fluxomes for use in Flux Balance Analysis.
IrrevRxnFluxome
          This interface is used to represent fluxomes that contain only irreversible reactions.
MixedFluxome
          This interface is used to represent fluxomes that contain multiple types of chemical reactions.
 

Classes in sbrt.kernel.fba used by sbrt.kernel.fba.proc
CatalyzedFluxome
          This interface is used to represent fluxomes with catalyzed reactions.
ChemRxn
          This interface is used to represent chemical reactions.
ExchangeRxn
          This interface is used to represent exchange reactions.
FluxConstraints
          This class is used to group sets of flux constraints.
Fluxome
          This interface is used to represent fluxomes for use in Flux Balance Analysis.
IrrevRxn
          This class is used to represent irreversible chemical reactions.
IrrevRxnFluxome
          This interface is used to represent fluxomes that contain only irreversible reactions.
MixedFluxome
          This interface is used to represent fluxomes that contain multiple types of chemical reactions.
RevExchRxn
          This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system.
RevRxn
          This class is used to represent reversible chemical reactions.
 

Classes in sbrt.kernel.fba used by sbrt.shell.io.fba
FluxConstraints
          This class is used to group sets of flux constraints.
Fluxome
          This interface is used to represent fluxomes for use in Flux Balance Analysis.
 

Classes in sbrt.kernel.fba used by sbrt.shell.mng.fba
CatalyzedFluxome
          This interface is used to represent fluxomes with catalyzed reactions.
ChemRxn
          This interface is used to represent chemical reactions.
FluxConstraints
          This class is used to group sets of flux constraints.
Fluxome
          This interface is used to represent fluxomes for use in Flux Balance Analysis.
IrrevRxnFluxome
          This interface is used to represent fluxomes that contain only irreversible reactions.
MixedFluxome
          This interface is used to represent fluxomes that contain multiple types of chemical reactions.
 

Classes in sbrt.kernel.fba used by sbrt.shell.proc.fba
ChemRxn
          This interface is used to represent chemical reactions.
IrrevRxnFluxome
          This interface is used to represent fluxomes that contain only irreversible reactions.
MixedFluxome
          This interface is used to represent fluxomes that contain multiple types of chemical reactions.
 

Classes in sbrt.kernel.fba used by sbrt.shell.text.chem
IrrevRxn
          This class is used to represent irreversible chemical reactions.
RevRxn
          This class is used to represent reversible chemical reactions.
 

Classes in sbrt.kernel.fba used by sbrt.shell.text.fba
CatalyzedFluxome
          This interface is used to represent fluxomes with catalyzed reactions.
ChemRxn
          This interface is used to represent chemical reactions.
Fluxome
          This interface is used to represent fluxomes for use in Flux Balance Analysis.
IrrevRxn
          This class is used to represent irreversible chemical reactions.
RevExchRxn
          This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system.
RevRxn
          This class is used to represent reversible chemical reactions.
SinkRxn
          This class is used to represent exchange reactions that transport chemicals from a chemical system to its surroundings.
SourceRxn
          This class is used to represent exchange reactions that transport chemicals to a chemical system from its surroundings.