Package sbrt.shell.io.fba

Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis.

See:
          Description

Interface Summary
FbaOptOutputFile<F extends Fluxome> This interface is used to represent FBA optimization output files.
 

Class Summary
CofoofSource<F extends Fluxome> This class is used to provide a source of column-oriented FBA optimization output files.
ColumnOrFbaOptOutputFile<F extends Fluxome> This class is used to write column-oriented output files containing FBA optimization data.
FluxCapInputFile This class is used to read files containing flux caps.
FluxIntervalInputFile This class is used to read flux interval input files.
RofoofSource<F extends Fluxome> This class is used to provide a source of row-oriented FBA optimization output files.
RowOrFbaOptOutputFile<F extends Fluxome> This class is used to write row-oriented output files containing FBA optimization data.
RxnNamExprSetInputFile<E extends MathExpr<S>,S> This class is used to read files containing a set of reaction name expressions.
SerFbaOptOutputFile<F extends Fluxome> This class is used to write output files containing FBA optimization data as serialized maps.
SfoofSource<F extends Fluxome> This class is used to provide a source of serialized FBA optimization output files.
 

Package sbrt.shell.io.fba Description

Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis.