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Packages that use OutputFile | |
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sbrt.shell.io | Provides classes and interfaces for reading and writing files. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng.comb | Provides classes for creating combinatorics process managers. |
sbrt.shell.proc.fba | Provides classes for converting FBA-related files of different formats. |
Uses of OutputFile in sbrt.shell.io |
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Classes in sbrt.shell.io with type parameters of type OutputFile | |
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class |
MultiOutputFiles<F extends OutputFile<R>,R>
This class is used to create multiple output files. |
Subinterfaces of OutputFile in sbrt.shell.io | |
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interface |
MapOutputFile<K,V>
This interface is used to represent output files that maps can be written to. |
interface |
MapTextOutputFile<K,V>
This interface is used to represent output files that maps can be written to as text. |
Classes in sbrt.shell.io that implement OutputFile | |
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class |
AbstractMapOutputFile<K,V>
This abstract class is a skeleton implementation of MapTextOutputFile. |
class |
ComoFile<K,V>
This class is used to write maps to text files in a column-oriented way. |
class |
RomoFile<K,V>
This class is used to write maps to text files in a row-oriented way. |
class |
SerializedOutputFile<E>
This class is used to write serialized objects to output files. |
class |
SmoFile<K,V>
This class is used to write serialized maps to output files. |
class |
TextOutputFile<T>
This class is used to represent output files containing plain text. |
Uses of OutputFile in sbrt.shell.io.fba |
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Subinterfaces of OutputFile in sbrt.shell.io.fba | |
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interface |
FbaOptOutputFile<F extends Fluxome>
This interface is used to represent FBA optimization output files. |
Classes in sbrt.shell.io.fba that implement OutputFile | |
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class |
ColumnOrFbaOptOutputFile<F extends Fluxome>
This class is used to write column-oriented output files containing FBA optimization data. |
class |
RowOrFbaOptOutputFile<F extends Fluxome>
This class is used to write row-oriented output files containing FBA optimization data. |
class |
SerFbaOptOutputFile<F extends Fluxome>
This class is used to write output files containing FBA optimization data as serialized maps. |
Uses of OutputFile in sbrt.shell.mng.comb |
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Methods in sbrt.shell.mng.comb that return OutputFile | |
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static OutputFile<java.util.Set<java.lang.String>> |
SingleElementUnionManager.getOutputFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out)
Returns an output file with the name provided in the manager input. |
static OutputFile<java.util.Set<java.lang.String>> |
SingleElementUnionManager.getOutputFile(java.lang.String fileName)
Returns an output file with the provided name. |
static OutputFile<java.util.Set<java.lang.String>> |
SingleElementUnionManager.getOutputFile(java.lang.String fileName,
java.io.PrintWriter out)
Returns an output file with the provided name. |
Uses of OutputFile in sbrt.shell.proc.fba |
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Methods in sbrt.shell.proc.fba with parameters of type OutputFile | |
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void |
MetatoolInputWriter.writeFile(IrrevRxnFluxome fluxome,
OutputFile<java.lang.String> file)
Writes a metatool input file. |
void |
MetatoolInputWriter.writeFile(MixedFluxome fluxome,
OutputFile<java.lang.String> file)
Writes a metatool input file. |
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