|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use FbaOptComputer | |
---|---|
sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of FbaOptComputer in sbrt.kernel.fba.comp |
---|
Constructors in sbrt.kernel.fba.comp with parameters of type FbaOptComputer | |
---|---|
AbstractFluxIntervalComputer(FbaOptComputer computer)
Constructs a new flux interval computer with the default zero cutoff. |
|
AbstractFluxIntervalComputer(FbaOptComputer computer,
double zeroCutoff)
Constructs a new flux interval computer with the provided zero cutoff. |
|
FastMsFluxRangeComputer(FbaOptComputer computer,
java.util.Map<java.lang.String,java.util.Set<LinearComb<java.lang.String>>> fluxCaps,
LinearSystemSolution<java.lang.String> systemSolution,
double zeroCutoff)
Constructs a new flux interval computer. |
|
InitialPointComputer(FbaOptComputer computer)
Constructs a new initial point, or flux vector, computer. |
|
MsFluxIntervalComputer(FbaOptComputer computer,
java.util.Map<java.lang.String,java.util.Set<LinearComb<java.lang.String>>> fluxCaps)
Constructs a new Mahadevan-Schilling flux interval computer. |
|
MsFluxIntervalComputer(FbaOptComputer computer,
java.util.Map<java.lang.String,java.util.Set<LinearComb<java.lang.String>>> fluxCaps,
double zeroCutoff)
Constructs a new Mahadevan-Schilling flux interval computer. |
|
ReverseRxnFluxIntervalComputer(FbaOptComputer computer,
double zeroCutoff)
Constructs a new flux interval computer. |
|
RxnDeletionComputer(FbaOptComputer computer)
Constructs a new reaction deletion computer. |
|
SimpleFluxIntervalComputer(FbaOptComputer computer,
double zeroCutoff)
Constructs a new flux interval computer. |
Uses of FbaOptComputer in sbrt.kernel.fba.proc |
---|
Constructors in sbrt.kernel.fba.proc with parameters of type FbaOptComputer | |
---|---|
CvFbaOptimizationExperiment(FbaOptComputer computer)
Constructs a new constraint-variation FBA optimization experiment. |
|
CvObjectiveFunctionProcess(FbaOptComputer computer)
Constructs a new constraint-variation objective function experiment. |
|
FbaOptimizationProcess(FbaOptComputer computer)
Constructs a new FBA optimization experiment. |
|
ObjectiveFunctionAnalysis(FbaOptComputer computer)
Constructs a new objective function experiment. |
|
StoichVariationProcess(FbaOptComputer computer)
Constructs a new constraint-variation FBA optimization process. |
Uses of FbaOptComputer in sbrt.shell.mng.fba |
---|
Methods in sbrt.shell.mng.fba that return FbaOptComputer | |
---|---|
static FbaOptComputer |
FbaOptManager.getComputer(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out)
Creates and returns an FBA optimization computer based on the provided input. |
static FbaOptComputer |
InitialPointManager.getComputer(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out)
Creates and returns an FBA optimization computer based on the provided input. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |