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java.lang.Objectsbrt.ext.metatool.MetatoolCycleComputer
public class MetatoolCycleComputer
This class is used to run metatool
to compute steady state cycles.
Constructor Summary | |
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MetatoolCycleComputer(java.io.File executable)
Constructs a new metatool steady state cycle computer. |
Method Summary | |
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SparseDoubleMatrix<?,java.lang.String> |
getCycles(IrrevRxnFluxome fluxome)
Returns the set of all steady state cycles contained in the provided fluxome. |
ProgressMonitor |
getProgress()
Returns a progress monitor for this cycle computer. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public MetatoolCycleComputer(java.io.File executable)
executable
- the full name of the metatool executable.Method Detail |
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public ProgressMonitor getProgress()
getProgress
in interface CycleComputer
public SparseDoubleMatrix<?,java.lang.String> getCycles(IrrevRxnFluxome fluxome)
getCycles
in interface CycleComputer
fluxome
- the fluxome for which all cycles will be returned.
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