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java.lang.Objectsbrt.shell.text.fba.RxnNameListFormatV1
public final class RxnNameListFormatV1
This class is a concrete implemenation of RxnNameListFormat.
Constructor Summary | |
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RxnNameListFormatV1(Fluxome fluxome)
Constructs a new reaction name list format using the provided fluxome. |
Method Summary | |
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java.lang.String |
format(java.util.List<java.lang.String> reactionNames)
Returns a formatted string representation of the provided list of reaction names. |
Fluxome |
getFluxome()
Returns the fluxome used to verify reaction names. |
WhitespaceListFormat<java.lang.String> |
getListFormat()
Returns the format used for lists of reaction names. |
RxnNameVerifier |
getRxnNameChecker()
Returns the reaction name verifier. |
java.util.List<java.lang.String> |
parse(java.lang.String reactionNames)
Parses the provided string and returns the list of reaction names it contains. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface sbrt.shell.text.Formatter |
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format |
Constructor Detail |
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public RxnNameListFormatV1(Fluxome fluxome)
fluxome
- the fluxome used to verify reaction
names.Method Detail |
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public Fluxome getFluxome()
getFluxome
in interface RxnNameListFormat
public WhitespaceListFormat<java.lang.String> getListFormat()
public RxnNameVerifier getRxnNameChecker()
public java.lang.String format(java.util.List<java.lang.String> reactionNames)
format
in interface RxnNameListFormat
reactionNames
- the list of reaction names to be formatted.
public java.util.List<java.lang.String> parse(java.lang.String reactionNames)
parse
in interface RxnNameListFormat
parse
in interface Parser<java.util.List<java.lang.String>>
reactionNames
- the string to be parsed.
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