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Packages that use FluxCvComputer | |
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sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
Uses of FluxCvComputer in sbrt.kernel.fba.comp |
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Subinterfaces of FluxCvComputer in sbrt.kernel.fba.comp | |
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interface |
FluxIntervalComputer<F extends Fluxome>
This interface is used to represent flux interval computers. |
Classes in sbrt.kernel.fba.comp that implement FluxCvComputer | |
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class |
AbstractCvComputer<F extends Fluxome>
This abstract class is a skeleton implementation of FluxCvComputer. |
class |
AbstractFluxIntervalComputer<F extends Fluxome>
This abstract class is a skeleton implemenation of FluxIntervalComputer. |
class |
CdHarFluxComp<F extends Fluxome>
This class is used to compute randomly distributed vectors within flux space. |
class |
FbaOptimizer<F extends Fluxome>
This class is the workhorse of all Flux Balance Analysis optimizations. |
class |
InitialPointComputer<F extends Fluxome>
This class is used to compute initial points for coordinate-direction hit-and-run random flux vector algorithms. |
class |
MsFluxIntervalComputer<F extends IrrevRxnFluxome>
This class is used to compute Mahadevan-Schilling flux intervals. |
class |
ReverseRxnIntervalComp<F extends IrrevRxnFluxome>
This class is used to compute flux intervals while constraining the fluxes of reverse reactions to their minimum. |
class |
RxnDeletionComputer<F extends Fluxome>
This class is used to compute the effect of deleting reactions in a fluxome. |
class |
SimpleFluxIntervalComputer<F extends Fluxome>
This class is used to compute flux intervals in the simplest possible way. |
Uses of FluxCvComputer in sbrt.kernel.fba.proc |
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Methods in sbrt.kernel.fba.proc with parameters of type FluxCvComputer | |
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static void |
AbstractCvFbaOptProcess.restoreConstraints(FluxConstraints constraints,
FluxCvComputer<?> computer)
Restores the provided constraints in the provided constraint-variation computer. |
static void |
AbstractCvFbaOptProcess.setConstraints(FluxConstraints constraints,
FluxCvComputer<?> computer)
Sets the provided constraints in the provided constraint-variation computer. |
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