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N

nameClassMap - Static variable in class sbrt.shell.ProgramSolverFactory
The correspondence between the strings used to denote a particular program solver and the name of the actual class it represents.
neighbors(Object) - Method in class sbrt.kernel.math.graph_theory.DirectedGraph
Returns the number of nodes neighboring the provided node.
NetworkInfoManager - Class in sbrt.shell.mng.fba
This class is used to manage fluxome information processes.
NetworkInfoManager() - Constructor for class sbrt.shell.mng.fba.NetworkInfoManager
 
NetworkInfoProcess<F extends CatalyzedFluxome> - Class in sbrt.kernel.fba.proc
This class is used to gather basic information about a fluxome.
NetworkInfoProcess(F) - Constructor for class sbrt.kernel.fba.proc.NetworkInfoProcess
Constructs a new network information gatherer process.
NetworkInfoProcess.Results<F extends CatalyzedFluxome> - Class in sbrt.kernel.fba.proc
This class is used to represent the information gathered about a fluxome.
NEVER_ACTIVE_FILE_NAME - Static variable in class sbrt.shell.mng.fba.FluxPlasticityManager
The keyword used to denote the name of the output file for the names of never-active reactions.
neverActive() - Method in class sbrt.kernel.fba.proc.FluxPlasticityProcess.Results
Returns the number of fluxes that are never active.
next() - Method in class sbrt.kernel.math.geom.comp.CdHarComp
Computes and returns the next random interior point of the convex polytope.
next(int) - Method in class sbrt.kernel.math.geom.comp.CdHarComp
Computes the specified number of random interior points, and returns the last one computed.
next() - Method in class sbrt.kernel.utilities.UnmodifiableIterator
See Iterator.next().
next() - Method in class sbrt.shell.io.ComiFileSource
Returns the next column-oriented map input file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.ComoFileSource
Returns the next column-oriented map output file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.fba.CofoofSource
Returns the next column-oriented map output file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.fba.RofoofSource
Returns the next row-oriented map output file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.fba.SfoofSource
Returns the next serialized map output file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.RomiFileSource
Returns the next row-oriented map input file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.RomoFileSource
Returns the next row-oriented map output file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.SerializedFileIterator
Returns the next object in the file.
next() - Method in class sbrt.shell.io.SmoFileSource
Returns the next column-oriented map output file with the next name returned by the file name source.
next() - Method in class sbrt.shell.io.TextFileLineIterator
Returns the next element in the file.
nextObject() - Method in class sbrt.shell.io.SerializedFileIterator
Returns the next object in the file.
NODE_FILE_NAME - Static variable in class sbrt.shell.mng.graph_theory.GraphInfoManager
The keyword used to denote the name of the file to which all nodes will be written.
nodes() - Method in class sbrt.kernel.math.graph_theory.DirectedGraph
Returns the number of nodes in this graph.
nodes() - Method in class sbrt.kernel.math.graph_theory.Path
Returns the number of nodes in this path.
NonEmptyStringFormat - Class in sbrt.shell.text
This class is used to define a format for String objects.
NonEmptyStringFormat() - Constructor for class sbrt.shell.text.NonEmptyStringFormat
 
NormalDist - Class in sbrt.kernel.math.stat
This class is used to represent normal distributions.
NormalDist(double, double) - Constructor for class sbrt.kernel.math.stat.NormalDist
Constructs a new normal distribution with the provided average and standard deviation.
NOT_PROVIDED - Static variable in class sbrt.shell.proc.fba.PalssonSbmlReader
The string used to denote that a particular value was not provided in an SBML input file.
nullCheck(Object) - Static method in class sbrt.kernel.utilities.Util
Ensures the provided object is not null.
NUM_ACTIVE_FLUXES - Static variable in class sbrt.shell.mng.fba.RandomConstraintsManager
The keyword used to denote the number of active fluxes.

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