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Packages that use RevRxn | |
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sbrt.kernel.fba | Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.shell.text.chem | Provides classes and interfaces for defining formats for chemistry related objects. |
sbrt.shell.text.fba | Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. |
Uses of RevRxn in sbrt.kernel.fba |
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Methods in sbrt.kernel.fba that return types with arguments of type RevRxn | ||
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static
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RxnComparer.getEquivRevRxns(T rxnId,
java.util.Map<T,RevRxn> rxns)
Returns the reactions in the provided map that are stoichiometrically equivalent to the reaction in the map with the provided map key. |
Methods in sbrt.kernel.fba with parameters of type RevRxn | |
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static boolean |
RxnComparer.equivRevRxns(RevRxn rxn1,
RevRxn rxn2)
Indicates if the provided reversible reactions are stoichiometrically equivalent. |
Method parameters in sbrt.kernel.fba with type arguments of type RevRxn | ||
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static
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RxnComparer.getEquivRevRxnIds(java.util.Map<T,RevRxn> rxns)
Returns a collection of sets of the names of stoichiometrically equivalent reactions contained in the provided map. |
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static
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RxnComparer.getEquivRevRxnIds(T rxnId,
java.util.Map<T,RevRxn> rxns)
Returns the keys in the provided map that correspond to reactions that are stoichiometrically equivalent to the reaction in the map with the specified map key. |
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static
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RxnComparer.getEquivRevRxns(T rxnId,
java.util.Map<T,RevRxn> rxns)
Returns the reactions in the provided map that are stoichiometrically equivalent to the reaction in the map with the provided map key. |
Uses of RevRxn in sbrt.kernel.fba.proc |
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Methods in sbrt.kernel.fba.proc with parameters of type RevRxn | |
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java.util.Map<java.lang.String,IrrevRxn> |
RevRxnBreakerProcess.breakRxn(java.lang.String rxnId,
RevRxn rxn)
Breaks a reversible reaction into a pair of irreversible reactions. |
Uses of RevRxn in sbrt.shell.text.chem |
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Methods in sbrt.shell.text.chem that return RevRxn | |
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RevRxn |
RevRxnFormatV1.parse(java.lang.String reaction)
Parses the provided string and returns its corresponding chemical reaction. |
Methods in sbrt.shell.text.chem with parameters of type RevRxn | |
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java.lang.String |
RevRxnFormatV1.format(RevRxn rxn)
Returns a formatted string representation of the provided reversible chemical reaction. |
Uses of RevRxn in sbrt.shell.text.fba |
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Methods in sbrt.shell.text.fba with parameters of type RevRxn | |
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java.lang.String |
RevRxnFormatV1.format(RevRxn rxn)
Returns a formatted string representation of the provided irreversible chemical reaction. |
java.lang.String |
RxnFormatV1.format(RevRxn rxn)
Returns a formatted string representation of the provided reversible reaction. |
java.lang.String |
RevRxnFormatV2.format(RevRxn rxn)
Returns a formatted string representation of the provided irreversible chemical reaction. |
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