sbrt.shell.proc.fba
Class PalssonSbmlTranslater
java.lang.Object
sbrt.shell.proc.fba.PalssonSbmlTranslater
public class PalssonSbmlTranslater
- extends java.lang.Object
This class is used to translate SBML files from Palsson's website into the
Systems Biology Research Tool's FBA Reaction Files and FBA
Catalyst Files.
- Author:
- This class was written and documented by Jeremiah Wright while in the
Wagner lab.
Method Summary |
void |
translate(java.lang.String sbmlFileName,
java.lang.String rxnFileName,
java.lang.String geneFileName,
java.lang.String proteinFileName,
java.io.PrintWriter out)
Translates an SBML file into an FBA Reaction File and two FBA Catalyst
Files. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PalssonSbmlTranslater
public PalssonSbmlTranslater()
- Constructs a new SBML translater.
translate
public void translate(java.lang.String sbmlFileName,
java.lang.String rxnFileName,
java.lang.String geneFileName,
java.lang.String proteinFileName,
java.io.PrintWriter out)
- Translates an SBML file into an FBA Reaction File and two FBA Catalyst
Files.
- Parameters:
sbmlFileName
- the name of the SBML file.rxnFileName
- the desired name of the FBA Reaction File.geneFileName
- the desired name of the FBA Catalyst File to which
genes will be written.proteinFileName
- the desired name of the FBA Catalyst File to which
proteins will be written.out
- the print writer to which descriptive messages will be
written.