Uses of Package
sbrt.shell.text.fba

Packages that use sbrt.shell.text.fba
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.proc.fba Provides classes for converting FBA-related files of different formats. 
sbrt.shell.text.fba Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. 
 

Classes in sbrt.shell.text.fba used by sbrt.shell.io.fba
FbaOptFileLineFormat
          This interface is used to represent formats of FBA optimization file lines.
FluxCapFormat
          This interface is used to represent the formats of lines of flux cap-containing files.
RxnNameExprFormat
          This interface is used to represent formats for mathematical expressions of reaction names.
 

Classes in sbrt.shell.text.fba used by sbrt.shell.mng.fba
RxnNameExprFormat
          This interface is used to represent formats for mathematical expressions of reaction names.
 

Classes in sbrt.shell.text.fba used by sbrt.shell.proc.fba
IrrevRxnFormatV2
          This class is used to format irreversible reactions for use in flux balance analysis.
RevRxnFormatV2
          This class is used to format reversible reactions for use in flux balance analysis.
RxnFormatV1
          This class is used to format reactions for use in flux balance analysis.
 

Classes in sbrt.shell.text.fba used by sbrt.shell.text.fba
CatalystListFormat
          This interface is used to represent the formats of lists of catalyst names.
CatalystSetFormat
          This interface is used to represent the formats of sets of enzyme names.
CatalystVerifier
          This class is used to ensure catalysts exist in a given CatalyzedFluxome.
ConstraintsFileLineFormat
          This interface is used to represent formats for flux constraints files.
FbaOptFileLineFormat
          This interface is used to represent formats of FBA optimization file lines.
FbaOptHeaderFormatter
          This interface is used to represent formatters for headers used in writing files of FBA optimization data.
FbaOptHeaderParser
          This interface is used to represent parsers for headers used in writing files of FBA optimization data.
FluxCapFormat
          This interface is used to represent the formats of lines of flux cap-containing files.
FluxomeSolutionFileLineFormat
          This interface is used to represent formats for solutions to the linear system of equations formed by a fluxome.
FluxVectorFormat
          This interface is used to represent formats for flux vectors.
IrrevRxnFormatV1
          This class is used to format irreversible reactions for use in flux balance analysis.
RevRxnFormatV1
          This class is used to format reversible reactions for use in flux balance analysis.
RxnFormatV1
          This class is used to format reactions for use in flux balance analysis.
RxnNameExprFormat
          This interface is used to represent formats for mathematical expressions of reaction names.
RxnNameExprFormatV1
          This class is used to format linear combinations of reaction names.
RxnNameListFormat
          This interface is used to represent the formats of collections of reaction names.
RxnNameOrExprFormat
          This interface is used to represent formats for reaction names and mathematical expressions of reaction names.
RxnNameSetFormat
          This interface is used to represent the formats of collections of reaction names.
RxnNameSetFormatV1
          This class is a concrete implemenation of RxnNameSetFormat.
RxnNameVerifier
          This class is used to ensure reaction names exist in a given Fluxome.