Uses of Package
sbrt.shell.io

Packages that use sbrt.shell.io
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng Provides classes and interfaces for creating process managers. 
sbrt.shell.mng.comb Provides classes for creating combinatorics process managers. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.mng.geom Provides classes and for creating geometry process managers. 
sbrt.shell.mng.graph_theory Provides classes and for creating graph theoretical process managers. 
sbrt.shell.proc.fba Provides classes for converting FBA-related files of different formats. 
sbrt.shell.text Provides classes and interfaces for defining formats for basic objects. 
 

Classes in sbrt.shell.io used by sbrt.shell.io
AbstractMapInputFile
          This abstract class is a skeleton implemenation of text-based map input files.
AbstractMapOutputFile
          This abstract class is a skeleton implementation of MapTextOutputFile.
ComiFile
          This class is used to read column-oriented map input files.
ComoFile
          This class is used to write maps to text files in a column-oriented way.
DevNull
          This class is used to mimic /dev/null from Unix-like operating systems.
EndOfFile
          This class is used to represent end-of-file (EOF).
FileFormat
          This class is used to represent file formats.
FileLineIterator
          This class is used to iterate through the lines of a file.
InputFile
          This interface is used to represent input files.
MapInputFile
          This interface is used to represent input files that contain maps.
MapOutputFile
          This interface is used to represent output files that maps can be written to.
MapTextFile
          This interface is used to represent text-based files that contain maps.
MapTextInputFile
          This interface is used to represent text-based input files that contain maps.
MapTextOutputFile
          This interface is used to represent output files that maps can be written to as text.
OutputFile
          This interface is used to represent output files.
RomiFile
          This class is used to read row-oriented map input files.
RomoFile
          This class is used to write maps to text files in a row-oriented way.
SbrtFile
          This interface is used to represent files.
SerializedFileIterator
          This class is used to iterate over the objects in a serialized input file.
SerializedInputFile
          This class is used to read input files containing serialized objects.
SerializedOutputFile
          This class is used to write serialized objects to output files.
SmoFile
          This class is used to write serialized maps to output files.
TextFileLineIterator
          This class is used to iterate over the lines of an input file.
TextInputFile
          This class is used to read input files containing text.
TextOutputFile
          This class is used to represent output files containing plain text.
 

Classes in sbrt.shell.io used by sbrt.shell.io.fba
FileFormat
          This class is used to represent file formats.
InputFile
          This interface is used to represent input files.
MapInputFile
          This interface is used to represent input files that contain maps.
MapTextFile
          This interface is used to represent text-based files that contain maps.
MapTextInputFile
          This interface is used to represent text-based input files that contain maps.
OutputFile
          This interface is used to represent output files.
SbrtFile
          This interface is used to represent files.
TextInputFile
          This class is used to read input files containing text.
 

Classes in sbrt.shell.io used by sbrt.shell.mng
FileFormat
          This class is used to represent file formats.
SbrtFile
          This interface is used to represent files.
TextInputFile
          This class is used to read input files containing text.
 

Classes in sbrt.shell.io used by sbrt.shell.mng.comb
OutputFile
          This interface is used to represent output files.
 

Classes in sbrt.shell.io used by sbrt.shell.mng.fba
ComoFile
          This class is used to write maps to text files in a column-oriented way.
FileFormat
          This class is used to represent file formats.
InputFile
          This interface is used to represent input files.
MapInputFile
          This interface is used to represent input files that contain maps.
MapOutputFile
          This interface is used to represent output files that maps can be written to.
MapTextOutputFile
          This interface is used to represent output files that maps can be written to as text.
MultiOutputFiles
          This class is used to create multiple output files.
RomoFile
          This class is used to write maps to text files in a row-oriented way.
TextInputFile
          This class is used to read input files containing text.
TextOutputFile
          This class is used to represent output files containing plain text.
 

Classes in sbrt.shell.io used by sbrt.shell.mng.geom
ComoFile
          This class is used to write maps to text files in a column-oriented way.
 

Classes in sbrt.shell.io used by sbrt.shell.mng.graph_theory
TextOutputFile
          This class is used to represent output files containing plain text.
 

Classes in sbrt.shell.io used by sbrt.shell.proc.fba
InputFile
          This interface is used to represent input files.
OutputFile
          This interface is used to represent output files.
 

Classes in sbrt.shell.io used by sbrt.shell.text
FileFormat
          This class is used to represent file formats.