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Packages that use sbrt.shell.io | |
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sbrt.shell.io | Provides classes and interfaces for reading and writing files. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng | Provides classes and interfaces for creating process managers. |
sbrt.shell.mng.comb | Provides classes for creating combinatorics process managers. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
sbrt.shell.mng.geom | Provides classes and for creating geometry process managers. |
sbrt.shell.mng.graph_theory | Provides classes and for creating graph theoretical process managers. |
sbrt.shell.proc.fba | Provides classes for converting FBA-related files of different formats. |
sbrt.shell.text | Provides classes and interfaces for defining formats for basic objects. |
Classes in sbrt.shell.io used by sbrt.shell.io | |
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AbstractMapInputFile
This abstract class is a skeleton implemenation of text-based map input files. |
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AbstractMapOutputFile
This abstract class is a skeleton implementation of MapTextOutputFile. |
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ComiFile
This class is used to read column-oriented map input files. |
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ComoFile
This class is used to write maps to text files in a column-oriented way. |
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DevNull
This class is used to mimic /dev/null from Unix-like operating systems. |
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EndOfFile
This class is used to represent end-of-file (EOF). |
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FileFormat
This class is used to represent file formats. |
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FileLineIterator
This class is used to iterate through the lines of a file. |
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InputFile
This interface is used to represent input files. |
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MapInputFile
This interface is used to represent input files that contain maps. |
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MapOutputFile
This interface is used to represent output files that maps can be written to. |
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MapTextFile
This interface is used to represent text-based files that contain maps. |
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MapTextInputFile
This interface is used to represent text-based input files that contain maps. |
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MapTextOutputFile
This interface is used to represent output files that maps can be written to as text. |
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OutputFile
This interface is used to represent output files. |
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RomiFile
This class is used to read row-oriented map input files. |
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RomoFile
This class is used to write maps to text files in a row-oriented way. |
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SbrtFile
This interface is used to represent files. |
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SerializedFileIterator
This class is used to iterate over the objects in a serialized input file. |
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SerializedInputFile
This class is used to read input files containing serialized objects. |
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SerializedOutputFile
This class is used to write serialized objects to output files. |
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SmoFile
This class is used to write serialized maps to output files. |
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TextFileLineIterator
This class is used to iterate over the lines of an input file. |
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TextInputFile
This class is used to read input files containing text. |
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TextOutputFile
This class is used to represent output files containing plain text. |
Classes in sbrt.shell.io used by sbrt.shell.io.fba | |
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FileFormat
This class is used to represent file formats. |
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InputFile
This interface is used to represent input files. |
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MapInputFile
This interface is used to represent input files that contain maps. |
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MapTextFile
This interface is used to represent text-based files that contain maps. |
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MapTextInputFile
This interface is used to represent text-based input files that contain maps. |
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OutputFile
This interface is used to represent output files. |
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SbrtFile
This interface is used to represent files. |
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TextInputFile
This class is used to read input files containing text. |
Classes in sbrt.shell.io used by sbrt.shell.mng | |
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FileFormat
This class is used to represent file formats. |
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SbrtFile
This interface is used to represent files. |
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TextInputFile
This class is used to read input files containing text. |
Classes in sbrt.shell.io used by sbrt.shell.mng.comb | |
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OutputFile
This interface is used to represent output files. |
Classes in sbrt.shell.io used by sbrt.shell.mng.fba | |
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ComoFile
This class is used to write maps to text files in a column-oriented way. |
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FileFormat
This class is used to represent file formats. |
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InputFile
This interface is used to represent input files. |
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MapInputFile
This interface is used to represent input files that contain maps. |
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MapOutputFile
This interface is used to represent output files that maps can be written to. |
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MapTextOutputFile
This interface is used to represent output files that maps can be written to as text. |
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MultiOutputFiles
This class is used to create multiple output files. |
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RomoFile
This class is used to write maps to text files in a row-oriented way. |
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TextInputFile
This class is used to read input files containing text. |
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TextOutputFile
This class is used to represent output files containing plain text. |
Classes in sbrt.shell.io used by sbrt.shell.mng.geom | |
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ComoFile
This class is used to write maps to text files in a column-oriented way. |
Classes in sbrt.shell.io used by sbrt.shell.mng.graph_theory | |
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TextOutputFile
This class is used to represent output files containing plain text. |
Classes in sbrt.shell.io used by sbrt.shell.proc.fba | |
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InputFile
This interface is used to represent input files. |
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OutputFile
This interface is used to represent output files. |
Classes in sbrt.shell.io used by sbrt.shell.text | |
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FileFormat
This class is used to represent file formats. |
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