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Packages that use ExchangeRxn | |
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sbrt.kernel.fba | Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
Uses of ExchangeRxn in sbrt.kernel.fba |
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Classes in sbrt.kernel.fba that implement ExchangeRxn | |
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class |
AbstractExchangeRxn
This class is a skeleton implementation of ExchangeRxn . |
class |
RevExchRxn
This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system. |
class |
SinkRxn
This class is used to represent exchange reactions that transport chemicals from a chemical system to its surroundings. |
class |
SourceRxn
This class is used to represent exchange reactions that transport chemicals to a chemical system from its surroundings. |
Methods in sbrt.kernel.fba that return ExchangeRxn | |
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ExchangeRxn |
MixedFluxomeV1.getExchangeRxn(java.lang.String reactionName)
Returns the exchange reaction in this fluxome with the provided name. |
ExchangeRxn |
IrrevRxnFluxomeV1.getExchangeRxn(java.lang.String reactionName)
Returns the exchange reaction in this fluxome with the provided name. |
ExchangeRxn |
MixedFluxome.getExchangeRxn(java.lang.String rxnName)
Returns the exchange reaction in this fluxome with the provided name. |
Methods in sbrt.kernel.fba that return types with arguments of type ExchangeRxn | |
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java.util.Map<java.lang.String,ExchangeRxn> |
MixedFluxomeV1.getExchangeRxns()
Returns all of the exchange reactions contained in this fluxome. |
java.util.Map<java.lang.String,? extends ExchangeRxn> |
Fluxome.getExchangeRxns()
Returns all of the exchange reactions contained in this fluxome. |
java.util.Map<java.lang.String,ExchangeRxn> |
IrrevRxnFluxomeV1.getExchangeRxns()
Returns all of the exchange reactions contained in this fluxome. |
java.util.Map<java.lang.String,ExchangeRxn> |
MixedFluxome.getExchangeRxns()
Returns all of the exchange reactions contained in this fluxome. |
java.util.Map<java.lang.String,ExchangeRxn> |
MixedFluxomeV1.getExchangeRxns(java.util.Collection<java.lang.String> rxnNames)
Returns the exchange reactions with the provided names. |
java.util.Map<java.lang.String,ExchangeRxn> |
MixedFluxome.getExchangeRxns(java.util.Collection<java.lang.String> rxnNames)
Returns the exchange reactions with the provided names. |
Uses of ExchangeRxn in sbrt.kernel.fba.proc |
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Methods in sbrt.kernel.fba.proc that return types with arguments of type ExchangeRxn | |
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java.util.Map<java.lang.String,ExchangeRxn> |
RevRxnBreakerProcess.breakRxn(java.lang.String rxnId,
RevExchRxn rxn)
Breaks a reversible exchange reaction into a pair of irreversible source and sink exchange reactions. |
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