sbrt.shell.text.fba
Interface FbaOptFileLineFormat

All Superinterfaces:
Format, MapFormat<java.lang.String,java.lang.Double>
All Known Implementing Classes:
FbaOptFileLineFormatV1

public interface FbaOptFileLineFormat
extends MapFormat<java.lang.String,java.lang.Double>

This interface is used to represent formats of FBA optimization file lines.

Author:
This interface was written and documented by Jeremiah Wright while in the Wagner lab.

Method Summary
 Fluxome getFluxome()
          Returns the fluxome used to verify reaction names.
 java.lang.String getObjValueHeader()
          Returns the header used to indicate the value of the objective function.
 boolean isObjValueHeader(java.lang.String s)
          Indicates if the provided string is the header used to indicate the value of the objective function.
 
Methods inherited from interface sbrt.shell.text.MapFormat
formatKey, formatKeys, formatPair, formatPair, formatValue, formatValues, formatValues, parseAllKeys, parseAllPairs, parseAllValues, parseAllValues, parseKey, parsePair, parseValue
 

Method Detail

getFluxome

Fluxome getFluxome()
Returns the fluxome used to verify reaction names.

Returns:
the fluxome used to verify reaction names.

getObjValueHeader

java.lang.String getObjValueHeader()
Returns the header used to indicate the value of the objective function.

Returns:
the header used to indicate the value of the objective function.

isObjValueHeader

boolean isObjValueHeader(java.lang.String s)
Indicates if the provided string is the header used to indicate the value of the objective function.

Parameters:
s - the string to compare.
Returns:
true if the provided string is equal to the string returned by getObjValueHeader(); false otherwise.