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Packages that use sbrt.kernel.fba.proc | |
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sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Classes in sbrt.kernel.fba.proc used by sbrt.kernel.fba.proc | |
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AbstractCvFbaOptProcess
This class is used to represent constraint-variation Flux Balance Analysis processes. |
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FbaProcess
This abstract class is used to represent Flux Balance Analysis processes. |
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FluxActivityProcess.Results
This class is used to represent the results of a flux activity process. |
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FluxPlasticityProcess.Results
This class is used to represent the results of a flux plasticity process. |
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NetworkInfoProcess.Results
This class is used to represent the information gathered about a fluxome. |
Classes in sbrt.kernel.fba.proc used by sbrt.shell.mng.fba | |
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CatalystDeletionProcess
This class is used to perform catalyst deletion processes. |
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CdHarFluxVectorProcess
This class is used to perform coordinate direction hit-and-run flux vector processes. |
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CvCatalystDeletionProcess
This class is used to perform constraint-variation catalyst deletion processes. |
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CvFbaOptProcess
This class is used to perform constraint-variation FBA optimization processes. |
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CvFluxIntervalProcess
This class is used to perform constraint variation flux interval processes. |
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CvObjectiveFunctionProcess
This class is used to perform constraint-variation objective function processes. |
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CvRxnDeletionProcess
This class is used to perform constraint-variation reaction deletion processes. |
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CycleIdProcess
This class is used to execute steady state cycle identification processes. |
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ExtremeCurrentProcess
This class is used to identify the extreme currents in stoichiometric networks. |
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FbaOptProcess
This class is used to perform a basic Flux Balance Analysis optimization. |
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FbaProcess
This abstract class is used to represent Flux Balance Analysis processes. |
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FbaSolverProcess
This class is used to solve the equation Sv = 0. |
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FluxActivityProcess
This class is used to analyze the activity of fluxes. |
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FluxCapProcess
This class is used to perform a flux cap identification. |
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FluxIntervalProcess
This class is used to perform flux interval computations. |
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FluxomeReducerProcess
This class is used to execute fluxome reduction processes. |
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FluxPlasticityProcess
This class is used to analyze the plasticity of fluxes. |
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InitialPointGenerator
This class is used to execute initial point generators. |
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NetworkInfoProcess
This class is used to gather basic information about a fluxome. |
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ObjFunAnalysis
This class is used to perform objective function analyses. |
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RandConstGeneratorV1
This class is used to generate random flux constraints. |
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RandomObjectiveGenerator
This class is used to generate random objective functions. |
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RedundRxnRemoverProcess
This class is used to remove redundant reactions from a fluxome. |
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RevRxnBreakerProcess
This class is used to break reversible reactions into pairs of irreversible reactions. |
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RxnDeletionProcess
This class is used to perform reaction deletion processes. |
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