Uses of Interface
sbrt.shell.io.OutputFile

Packages that use OutputFile
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.comb Provides classes for creating combinatorics process managers. 
sbrt.shell.proc.fba Provides classes for converting FBA-related files of different formats. 
 

Uses of OutputFile in sbrt.shell.io
 

Classes in sbrt.shell.io with type parameters of type OutputFile
 class MultiOutputFiles<F extends OutputFile<R>,R>
          This class is used to create multiple output files.
 

Subinterfaces of OutputFile in sbrt.shell.io
 interface MapOutputFile<K,V>
          This interface is used to represent output files that maps can be written to.
 interface MapTextOutputFile<K,V>
          This interface is used to represent output files that maps can be written to as text.
 

Classes in sbrt.shell.io that implement OutputFile
 class AbstractMapOutputFile<K,V>
          This abstract class is a skeleton implementation of MapTextOutputFile.
 class ComoFile<K,V>
          This class is used to write maps to text files in a column-oriented way.
 class RomoFile<K,V>
          This class is used to write maps to text files in a row-oriented way.
 class SerializedOutputFile<E>
          This class is used to write serialized objects to output files.
 class SmoFile<K,V>
          This class is used to write serialized maps to output files.
 class TextOutputFile<T>
          This class is used to represent output files containing plain text.
 

Uses of OutputFile in sbrt.shell.io.fba
 

Subinterfaces of OutputFile in sbrt.shell.io.fba
 interface FbaOptOutputFile<F extends Fluxome>
          This interface is used to represent FBA optimization output files.
 

Classes in sbrt.shell.io.fba that implement OutputFile
 class ColumnOrFbaOptOutputFile<F extends Fluxome>
          This class is used to write column-oriented output files containing FBA optimization data.
 class RowOrFbaOptOutputFile<F extends Fluxome>
          This class is used to write row-oriented output files containing FBA optimization data.
 class SerFbaOptOutputFile<F extends Fluxome>
          This class is used to write output files containing FBA optimization data as serialized maps.
 

Uses of OutputFile in sbrt.shell.mng.comb
 

Methods in sbrt.shell.mng.comb that return OutputFile
static OutputFile<java.util.Set<java.lang.String>> SingleElementUnionManager.getOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out)
          Returns an output file with the name provided in the manager input.
static OutputFile<java.util.Set<java.lang.String>> SingleElementUnionManager.getOutputFile(java.lang.String fileName)
          Returns an output file with the provided name.
static OutputFile<java.util.Set<java.lang.String>> SingleElementUnionManager.getOutputFile(java.lang.String fileName, java.io.PrintWriter out)
          Returns an output file with the provided name.
 

Uses of OutputFile in sbrt.shell.proc.fba
 

Methods in sbrt.shell.proc.fba with parameters of type OutputFile
 void MetatoolInputWriter.writeFile(IrrevRxnFluxome fluxome, OutputFile<java.lang.String> file)
          Writes a metatool input file.
 void MetatoolInputWriter.writeFile(MixedFluxome fluxome, OutputFile<java.lang.String> file)
          Writes a metatool input file.