Uses of Class
sbrt.shell.io.ComoFile

Packages that use ComoFile
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.mng.geom Provides classes and for creating geometry process managers. 
 

Uses of ComoFile in sbrt.shell.io
 

Methods in sbrt.shell.io that return ComoFile
 ComoFile<K,V> ComoFileSource.next()
          Returns the next column-oriented map output file with the next name returned by the file name source.
 

Uses of ComoFile in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return ComoFile
static ComoFile<java.lang.String,Interval> SimpleFluxIntervalManager.getMultiResultsOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing multiple sets of flux interval results.
static ComoFile<java.lang.String,Interval> SimpleFluxIntervalManager.getMultiResultsOutputFile(java.lang.String fileName, java.util.Set<java.lang.String> headers, Fluxome fluxome)
          Returns an empty output file that is suitable for storing multiple sets of flux interval results.
static ComoFile<java.lang.String,java.lang.Double> ExtremeCurrentManager.getOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome, java.util.Set<java.lang.String> rxnNames)
          Returns an output file to which extreme currents can be written.
static ComoFile<java.lang.String,java.lang.Double> ExtremeCurrentManager.getOutputFile(java.lang.String fileName, java.io.PrintWriter out, Fluxome fluxome, java.util.Set<java.lang.String> rxnNames)
          Returns an output file to which extreme currents can be written.
 

Constructors in sbrt.shell.mng.fba with parameters of type ComoFile
ExtremeCurrentManager.Rm(ComoFile<java.lang.String,java.lang.Double> output)
          Constructs a new results manager for writing extreme current matrices.
 

Uses of ComoFile in sbrt.shell.mng.geom
 

Methods in sbrt.shell.mng.geom that return ComoFile
static ComoFile<java.lang.String,java.lang.Double> CdHarManager.getOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Set<java.lang.String> headers)
          Returns an output file with the name provided in the manager input.
static ComoFile<java.lang.String,java.lang.Double> CdHarManager.getOutputFile(java.lang.String fileName, java.io.PrintWriter out, java.util.Set<java.lang.String> headers)
          Returns an output file with the provided name.
static ComoFile<java.lang.String,java.lang.Double> CdHarManager.getOutputFile(java.lang.String fileName, java.util.Set<java.lang.String> headers)
          Returns an output file with the provided name.