sbrt.shell.proc.fba
Class MetatoolInputWriter

java.lang.Object
  extended by sbrt.shell.proc.fba.MetatoolInputWriter

public class MetatoolInputWriter
extends java.lang.Object

This class is used to write input files for Metatool.


Field Summary
static java.lang.String SURR
          The string used to denote the surroundings.
 
Constructor Summary
MetatoolInputWriter()
          Creates a new Metatool input file writer.
 
Method Summary
 void writeFile(IrrevRxnFluxome fluxome, OutputFile<java.lang.String> file)
          Writes a metatool input file.
 void writeFile(MixedFluxome fluxome, OutputFile<java.lang.String> file)
          Writes a metatool input file.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

SURR

public static final java.lang.String SURR
The string used to denote the surroundings.

See Also:
Constant Field Values
Constructor Detail

MetatoolInputWriter

public MetatoolInputWriter()
Creates a new Metatool input file writer.

Method Detail

writeFile

public void writeFile(IrrevRxnFluxome fluxome,
                      OutputFile<java.lang.String> file)
Writes a metatool input file.

Parameters:
fluxome - the network to be written to file.
file - the metatool input file.

writeFile

public void writeFile(MixedFluxome fluxome,
                      OutputFile<java.lang.String> file)
Writes a metatool input file.

Parameters:
fluxome - the network to be written to file.
file - the metatool input file.