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Packages that use sbrt.kernel.fba | |
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sbrt.kernel.fba | Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. |
sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
sbrt.shell.proc.fba | Provides classes for converting FBA-related files of different formats. |
sbrt.shell.text.chem | Provides classes and interfaces for defining formats for chemistry related objects. |
sbrt.shell.text.fba | Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. |
Classes in sbrt.kernel.fba used by sbrt.kernel.fba | |
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AbstractExchangeRxn
This class is a skeleton implementation of ExchangeRxn . |
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AbstractRxn
This class is a skeleton implementation of ChemicalRxn. |
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CatalyzedFluxome
This interface is used to represent fluxomes with catalyzed reactions. |
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ChemRxn
This interface is used to represent chemical reactions. |
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ExchangeRxn
This interface is used to represent exchange reactions. |
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FluxConstraints
This class is used to group sets of flux constraints. |
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Fluxome
This interface is used to represent fluxomes for use in Flux Balance Analysis. |
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IrrevRxn
This class is used to represent irreversible chemical reactions. |
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IrrevRxnFluxome
This interface is used to represent fluxomes that contain only irreversible reactions. |
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IrrevRxnFluxomeV1
This class is a concrete implementation of IrrevRxnFluxome . |
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MixedFluxome
This interface is used to represent fluxomes that contain multiple types of chemical reactions. |
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MixedFluxomeV1
This class is a concrete implementation of MixedFluxome . |
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RevExchRxn
This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system. |
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RevRxn
This class is used to represent reversible chemical reactions. |
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SinkRxn
This class is used to represent exchange reactions that transport chemicals from a chemical system to its surroundings. |
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SourceRxn
This class is used to represent exchange reactions that transport chemicals to a chemical system from its surroundings. |
Classes in sbrt.kernel.fba used by sbrt.kernel.fba.comp | |
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Fluxome
This interface is used to represent fluxomes for use in Flux Balance Analysis. |
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IrrevRxnFluxome
This interface is used to represent fluxomes that contain only irreversible reactions. |
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MixedFluxome
This interface is used to represent fluxomes that contain multiple types of chemical reactions. |
Classes in sbrt.kernel.fba used by sbrt.kernel.fba.proc | |
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CatalyzedFluxome
This interface is used to represent fluxomes with catalyzed reactions. |
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ChemRxn
This interface is used to represent chemical reactions. |
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ExchangeRxn
This interface is used to represent exchange reactions. |
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FluxConstraints
This class is used to group sets of flux constraints. |
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Fluxome
This interface is used to represent fluxomes for use in Flux Balance Analysis. |
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IrrevRxn
This class is used to represent irreversible chemical reactions. |
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IrrevRxnFluxome
This interface is used to represent fluxomes that contain only irreversible reactions. |
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MixedFluxome
This interface is used to represent fluxomes that contain multiple types of chemical reactions. |
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RevExchRxn
This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system. |
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RevRxn
This class is used to represent reversible chemical reactions. |
Classes in sbrt.kernel.fba used by sbrt.shell.io.fba | |
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FluxConstraints
This class is used to group sets of flux constraints. |
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Fluxome
This interface is used to represent fluxomes for use in Flux Balance Analysis. |
Classes in sbrt.kernel.fba used by sbrt.shell.mng.fba | |
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CatalyzedFluxome
This interface is used to represent fluxomes with catalyzed reactions. |
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ChemRxn
This interface is used to represent chemical reactions. |
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FluxConstraints
This class is used to group sets of flux constraints. |
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Fluxome
This interface is used to represent fluxomes for use in Flux Balance Analysis. |
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IrrevRxnFluxome
This interface is used to represent fluxomes that contain only irreversible reactions. |
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MixedFluxome
This interface is used to represent fluxomes that contain multiple types of chemical reactions. |
Classes in sbrt.kernel.fba used by sbrt.shell.proc.fba | |
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ChemRxn
This interface is used to represent chemical reactions. |
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IrrevRxnFluxome
This interface is used to represent fluxomes that contain only irreversible reactions. |
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MixedFluxome
This interface is used to represent fluxomes that contain multiple types of chemical reactions. |
Classes in sbrt.kernel.fba used by sbrt.shell.text.chem | |
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IrrevRxn
This class is used to represent irreversible chemical reactions. |
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RevRxn
This class is used to represent reversible chemical reactions. |
Classes in sbrt.kernel.fba used by sbrt.shell.text.fba | |
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CatalyzedFluxome
This interface is used to represent fluxomes with catalyzed reactions. |
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ChemRxn
This interface is used to represent chemical reactions. |
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Fluxome
This interface is used to represent fluxomes for use in Flux Balance Analysis. |
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IrrevRxn
This class is used to represent irreversible chemical reactions. |
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RevExchRxn
This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system. |
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RevRxn
This class is used to represent reversible chemical reactions. |
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SinkRxn
This class is used to represent exchange reactions that transport chemicals from a chemical system to its surroundings. |
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SourceRxn
This class is used to represent exchange reactions that transport chemicals to a chemical system from its surroundings. |
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