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Packages that use OptSense | |
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sbrt.ext.cplex | Provides a class that allows communication with CPLEX. |
sbrt.ext.glpk | Provides a class that allows communication with GLPK. |
sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.kernel.math.optimization | Provides classes and interfaces for creating objects relevant to solving optimization problems. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
sbrt.shell.text.math | Provides classes and interfaces for defining formats for mathematical objects. |
Uses of OptSense in sbrt.ext.cplex |
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Methods in sbrt.ext.cplex with parameters of type OptSense | |
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void |
CplexSolver.setObjectiveFunction(LinearComb<? extends C> objective,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
CplexSolver.setObjectiveFunction(MathExpr<? extends C> objective,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
CplexSolver.setObjectiveFunction(QuadraticExpr<? extends C> objective,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
CplexSolver.setOptimizationSense(OptSense sense)
Sets the optimization sense. |
Uses of OptSense in sbrt.ext.glpk |
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Methods in sbrt.ext.glpk with parameters of type OptSense | |
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void |
GlpkSolver.setObjectiveFunction(LinearComb<? extends C> expression,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
GlpkSolver.setObjectiveFunction(MathExpr<? extends C> expression,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
GlpkSolver.setOptimizationSense(OptSense sense)
Sets the optimization sense. |
Uses of OptSense in sbrt.kernel.fba.comp |
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Methods in sbrt.kernel.fba.comp that return OptSense | |
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OptSense |
RxnDeletionComputer.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
FbaOptException.getSense()
Returns the sense, or direction, of the attempted optimization. |
Methods in sbrt.kernel.fba.comp with parameters of type OptSense | |
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FbaOptimizer.Results |
FbaOptimizer.getOptimal(MathExpr<?> objective,
OptSense sense)
Returns the results of computing the optimal value of the provided objective function. |
FbaOptimizer.Results |
FbaOptimizer.getOptimal(java.lang.String reactionName,
OptSense sense)
Returns the results of computing the optimal flux of the reaction with the provided name. |
void |
RxnDeletionComputer.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
Constructors in sbrt.kernel.fba.comp with parameters of type OptSense | |
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FbaOptException(MathExpr<?> objectiveFunction,
OptSense sense,
ProgramSolverStatus status)
Constructs a new FBA optimization exception. |
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FbaOptException(MathExpr<?> objectiveFunction,
OptSense sense,
ProgramSolverStatus status,
java.lang.String message)
Constructs a new FBA optimization exception. |
Uses of OptSense in sbrt.kernel.fba.proc |
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Methods in sbrt.kernel.fba.proc that return OptSense | |
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OptSense |
CvFbaOptProcess.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
CatalystDeletionProcess.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
RxnDeletionProcess.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
CvRxnDeletionProcess.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
FbaOptProcess.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
CvObjectiveFunctionProcess.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
ObjFunAnalysis.getOptimizationSense()
Returns the current optimization sense. |
OptSense |
CvCatalystDeletionProcess.getOptimizationSense()
Returns the current optimization sense. |
Methods in sbrt.kernel.fba.proc with parameters of type OptSense | |
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void |
CvFbaOptProcess.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
void |
CatalystDeletionProcess.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
void |
RxnDeletionProcess.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
void |
CvRxnDeletionProcess.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
void |
FbaOptProcess.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
void |
CvObjectiveFunctionProcess.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
void |
ObjFunAnalysis.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
void |
CvCatalystDeletionProcess.setOptimizationSense(OptSense sense)
Sets the optimization sense to the provided value. |
Uses of OptSense in sbrt.kernel.math.optimization |
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Methods in sbrt.kernel.math.optimization that return OptSense | |
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static OptSense |
OptSense.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name. |
static OptSense[] |
OptSense.values()
Returns an array containing the constants of this enum type, in the order they are declared. |
Methods in sbrt.kernel.math.optimization with parameters of type OptSense | |
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void |
LinearProgramSolver.setObjectiveFunction(LinearComb<? extends C> expression,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
ProgramSolver.setObjectiveFunction(MathExpr<? extends C> expression,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
QuadraticProgramSolver.setObjectiveFunction(QuadraticExpr<? extends C> expression,
OptSense sense)
Sets the objective function and optimization sense to the provided values. |
void |
ProgramSolver.setOptimizationSense(OptSense sense)
Sets the optimization sense. |
Uses of OptSense in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return OptSense | |
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static OptSense |
FbaOptManager.getOptSense(ManagerInput<java.lang.String,java.lang.String> input)
Parses and returns the value for FbaOptManager.OPTIMIZATION_SENSE in the provided manager input. |
Uses of OptSense in sbrt.shell.text.math |
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Methods in sbrt.shell.text.math that return OptSense | |
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OptSense |
SenseFormat.parse(java.lang.String source)
Parses the provided string and returns its corresponding object. |
Methods in sbrt.shell.text.math with parameters of type OptSense | |
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java.lang.String |
SenseFormat.format(OptSense obj)
Returns a formatted string representation of the provided optimization sense. |
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