A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

H

Hamming - Class in sbrt.kernel.math.geom.comp
This class is used to compute Hamming distances - the number of differences between two "strings" of equal length.
Hamming() - Constructor for class sbrt.kernel.math.geom.comp.Hamming
 
hasAllVariables(Collection<?>) - Method in class sbrt.kernel.math.AbstractLinearComb.Term
Indicates if this term contains all of the variables in the provided collection.
hasAllVariables(Collection<?>) - Method in class sbrt.kernel.math.HashLinearComb
Indicates if this mathematical expression contains all of the variables in the provided collection.
hasAllVariables(Collection<?>) - Method in interface sbrt.kernel.math.MathExpr
Indicates if this mathematical expression contains all of the variables in the provided collection.
hasAllVariables(Collection<?>) - Method in interface sbrt.kernel.math.Polynomial.Term
Indicates if this term contains all of the variables in the provided collection.
HASH - Static variable in class sbrt.shell.text.SpecialChars
#
hashCode() - Method in class sbrt.kernel.fba.AbstractExchangeRxn
Returns a content-based hash code for this exchange reaction.
hashCode() - Method in class sbrt.kernel.fba.AbstractRxn
Returns a content-based hash code for this reaction.
hashCode() - Method in interface sbrt.kernel.fba.ChemRxn
Returns a content-based hash code for this chemical reaction.
hashCode() - Method in class sbrt.kernel.math.AbstractLinearComb.Term
Returns a content-based hash code for this term.
hashCode() - Method in class sbrt.kernel.math.AbstractPolynomial
Returns a content-based hash code of this polynomial.
hashCode() - Method in class sbrt.kernel.math.algebra.AbstractMdMatrix
Returns a content-based hash code.
hashCode() - Method in class sbrt.kernel.math.algebra.AbstractSmdMatrix
Returns a content-based hash code.
hashCode() - Method in class sbrt.kernel.math.algebra.HashMatrix
Returns a content-based hash code for this matrix.
hashCode() - Method in class sbrt.kernel.math.algebra.IndexPair
Returns a content-based hash code.
hashCode() - Method in interface sbrt.kernel.math.algebra.Matrix
Returns a content-based hash code for this matrix.
hashCode() - Method in class sbrt.kernel.math.algebra.MatrixElement
Returns a content-based hash code.
hashCode() - Method in class sbrt.kernel.math.algebra.MatrixWrap
Returns a content-based hash code for this matrix.
hashCode() - Method in class sbrt.kernel.math.algebra.RowOrTreeMatrix
Returns a content-based hash code for this matrix.
hashCode() - Method in class sbrt.kernel.math.algebra.TreeMatrix
Returns a content-based hash code for this matrix.
hashCode() - Method in class sbrt.kernel.math.geom.ParallelHyperplanes
Returns a content-based hash code.
hashCode() - Method in class sbrt.kernel.math.graph_theory.DirectedGraph.Edge
Returns a content-based hash code for this directed edge.
hashCode() - Method in class sbrt.kernel.math.graph_theory.Path
Returns a hash code based on the nodes contained in this path.
hashCode() - Method in class sbrt.kernel.math.Interval
Returns a content-based hash code.
hashCode() - Method in interface sbrt.kernel.math.LinearComb
Returns a content-based hash code for this linear combination.
hashCode() - Method in interface sbrt.kernel.math.MathExpr
Returns a content-based hash code for this mathematical expression.
hashCode() - Method in interface sbrt.kernel.math.Polynomial
Returns a content-based hash code for this polynomial.
hashCode() - Method in interface sbrt.kernel.math.Polynomial.Term
Returns a content-based hash code for this term.
hashCode() - Method in class sbrt.kernel.math.stat.comp.MannWhitneyResults
Returns a content-based hash code.
hashCode() - Method in class sbrt.kernel.math.stat.comp.TauResult
Returns a content-based hash code.
hashCode() - Method in class sbrt.kernel.utilities.LogicalRelation
Returns a content-based hash code.
hashCode() - Method in class sbrt.kernel.utilities.UnmodifiableCollection
See Collection.hashCode().
hashCode() - Method in class sbrt.kernel.utilities.UnmodifiableList
See List.hashCode().
hashCode() - Method in class sbrt.kernel.utilities.UnmodifiableMap
See Map.hashCode().
hashCode() - Method in class sbrt.kernel.utilities.UnmodifiableSet
See Set.hashCode().
hashCode() - Method in class sbrt.shell.io.EndOfFile
Returns 0.
HashConvexPolytope<V> - Class in sbrt.kernel.math.geom
This class is a concrete implemenation of ConvexPolytope.
HashConvexPolytope(Set<ParallelHyperplanes<V>>) - Constructor for class sbrt.kernel.math.geom.HashConvexPolytope
Constructs a new convex poltyope from the provided linear system solution and variable bounds.
HashLinearComb<V> - Class in sbrt.kernel.math
This class is a concrete implemenation of LinearComb.
HashLinearComb(LinearComb.Term<? extends V>[], double, double) - Constructor for class sbrt.kernel.math.HashLinearComb
Constructs a new linear combination from the provided terms and constant.
HashLinearComb(Collection<? extends LinearComb.Term<? extends V>>, double, double) - Constructor for class sbrt.kernel.math.HashLinearComb
Constructs a new linear combination from the provided terms and constant.
HashLinearComb.Term<V> - Class in sbrt.kernel.math
This class is a concrete implementation of LinearComb.Term.
HashLinearComb.Term(double, V) - Constructor for class sbrt.kernel.math.HashLinearComb.Term
Constructs a new linear combination term with the provided coefficient and variable.
HashLinearComb.Term(V, double) - Constructor for class sbrt.kernel.math.HashLinearComb.Term
Constructs a new linear combination term with the provided coefficient and variable.
HashLinearComb.Term(V) - Constructor for class sbrt.kernel.math.HashLinearComb.Term
Constructs a new linear combination term with the provided variable.
HashLinearSystemSolution<V> - Class in sbrt.kernel.math.algebra
This class is a concrete implemenation of LinearSystemSolution.
HashLinearSystemSolution(Map<? extends V, ? extends LinearComb<? extends V>>) - Constructor for class sbrt.kernel.math.algebra.HashLinearSystemSolution
Constructs a new hash code-based linear system solution.
HashMatrix<R,C> - Class in sbrt.kernel.math.algebra
This class is a java.util.LinkedHashMap based implementation of SmdMatrix.
HashMatrix() - Constructor for class sbrt.kernel.math.algebra.HashMatrix
Constructs an emtpy HashMatrix with the default initial capacity (16) and the default load factor (0.75).
HashMatrix(int, int, float) - Constructor for class sbrt.kernel.math.algebra.HashMatrix
Constructs an empty HashMatrix with the provided initial capacities and load factor.
hasNext() - Method in class sbrt.kernel.utilities.UnmodifiableIterator
See Iterator.hasNext().
hasNext() - Method in class sbrt.shell.io.ComiFileSource
Indicates if this iterator can return another file using the next() method .
hasNext() - Method in class sbrt.shell.io.ComoFileSource
Indicates if this iterator can return another file using the next() method .
hasNext() - Method in class sbrt.shell.io.fba.CofoofSource
Indicates if this iterator can return another file using the next() method.
hasNext() - Method in class sbrt.shell.io.fba.RofoofSource
Indicates if this iterator can return another file using the next() method.
hasNext() - Method in class sbrt.shell.io.fba.SfoofSource
Indicates if this iterator can return another file using the next() method.
hasNext() - Method in class sbrt.shell.io.RomiFileSource
Indicates if this iterator can return another file using the next() method .
hasNext() - Method in class sbrt.shell.io.RomoFileSource
Indicates if this iterator can return another file using the next() method .
hasNext() - Method in class sbrt.shell.io.SerializedFileIterator
Indicates if the file has more serialized objects.
hasNext() - Method in class sbrt.shell.io.SmoFileSource
Indicates if this iterator can return another file using the next() method .
hasNext() - Method in class sbrt.shell.io.TextFileLineIterator
Indicates if the file has more lines.
hasNode(Object) - Method in class sbrt.kernel.math.graph_theory.DirectedGraph.Edge
Indicates if the provided object is a node of this directed edge.
hasValueFor(Object) - Method in class sbrt.shell.io.ProcessInputFile
Indicates if a value exists for the provided key in this manager input.
hasValueFor(Object) - Method in interface sbrt.shell.mng.ManagerInput
Indicates if a value exists for the provided key in this manager input.
hasValueFor(Object) - Method in class sbrt.shell.mng.MapManagerInput
Indicates if a value exists for the provided key in this manager input.
hasVariable(Object) - Method in class sbrt.kernel.math.AbstractLinearComb.Term
Indicates if the provided object is a variable contained in this term.
hasVariable(Object) - Method in class sbrt.kernel.math.HashLinearComb
Indicates if the provided object is a variable contained in this mathematical expression.
hasVariable(Object) - Method in interface sbrt.kernel.math.MathExpr
Indicates if the provided object is a variable contained in this mathematical expression.
hasVariable(Object) - Method in interface sbrt.kernel.math.Polynomial.Term
Indicates if the provided object is a variable contained in this term.
hasVariables() - Method in class sbrt.kernel.math.AbstractLinearComb.Term
Returns true.
hasVariables() - Method in class sbrt.kernel.math.HashLinearComb
Indicates if this mathematical expression contains any variables.
hasVariables() - Method in interface sbrt.kernel.math.MathExpr
Indicates if this mathematical expression contains any variables.
HomeDirectory - Class in sbrt.shell
This class is used to return the home directory of the SBRT, that is, the directory in which the SBRT resides.
HomeDirectory() - Constructor for class sbrt.shell.HomeDirectory
 

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z