Uses of Interface
sbrt.shell.io.SbrtFile

Packages that use SbrtFile
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng Provides classes and interfaces for creating process managers. 
 

Uses of SbrtFile in sbrt.shell.io
 

Subinterfaces of SbrtFile in sbrt.shell.io
 interface InputFile<E>
          This interface is used to represent input files.
 interface MapInputFile<K,V>
          This interface is used to represent input files that contain maps.
 interface MapOutputFile<K,V>
          This interface is used to represent output files that maps can be written to.
 interface MapTextFile<K,V>
          This interface is used to represent text-based files that contain maps.
 interface MapTextInputFile<K,V>
          This interface is used to represent text-based input files that contain maps.
 interface MapTextOutputFile<K,V>
          This interface is used to represent output files that maps can be written to as text.
 interface OutputFile<T>
          This interface is used to represent output files.
 

Classes in sbrt.shell.io that implement SbrtFile
 class AbstractMapInputFile<K,V>
          This abstract class is a skeleton implemenation of text-based map input files.
 class AbstractMapOutputFile<K,V>
          This abstract class is a skeleton implementation of MapTextOutputFile.
 class ComiFile<K,V>
          This class is used to read column-oriented map input files.
 class ComoFile<K,V>
          This class is used to write maps to text files in a column-oriented way.
 class ProcessInputFile
          This class is used to represent process input files.
 class RomiFile<K,V>
          This class is used to read row-oriented map input files.
 class RomoFile<K,V>
          This class is used to write maps to text files in a row-oriented way.
 class SerializedInputFile<E>
          This class is used to read input files containing serialized objects.
 class SerializedMapInputFile<K,V>
          This class is used to read input files containing serialized maps.
 class SerializedOutputFile<E>
          This class is used to write serialized objects to output files.
 class SmoFile<K,V>
          This class is used to write serialized maps to output files.
 class TextInputFile<E>
          This class is used to read input files containing text.
 class TextOutputFile<T>
          This class is used to represent output files containing plain text.
 

Uses of SbrtFile in sbrt.shell.io.fba
 

Subinterfaces of SbrtFile in sbrt.shell.io.fba
 interface FbaOptOutputFile<F extends Fluxome>
          This interface is used to represent FBA optimization output files.
 

Classes in sbrt.shell.io.fba that implement SbrtFile
 class ColumnOrFbaOptOutputFile<F extends Fluxome>
          This class is used to write column-oriented output files containing FBA optimization data.
 class FluxCapInputFile
          This class is used to read files containing flux caps.
 class FluxIntervalInputFile
          This class is used to read flux interval input files.
 class RowOrFbaOptOutputFile<F extends Fluxome>
          This class is used to write row-oriented output files containing FBA optimization data.
 class RxnNamExprSetInputFile<E extends MathExpr<S>,S>
          This class is used to read files containing a set of reaction name expressions.
 class SerFbaOptOutputFile<F extends Fluxome>
          This class is used to write output files containing FBA optimization data as serialized maps.
 

Uses of SbrtFile in sbrt.shell.mng
 

Methods in sbrt.shell.mng with parameters of type SbrtFile
static void AbstractProcessManager.closeFile(SbrtFile file, java.io.PrintWriter out)
          Closes the provided results manager and prints a descriptive message to the provided print writer.