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See:
Description
Class Summary | |
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BiggSbmlReaderManager | This class is used to manage the reading of SBML files obtained from the BiGG Database. |
CatalystDeletionManager | This class is used to manage FBA catalyst deletion processes. |
CdHarFluxVectorManager | This class is used to manage FBA coordinate direction hit-and-run random flux vector processes. |
CvCatalystDeletionManager | This class is used to manage FBA constraint variation-catalyst deletion processes. |
CvFbaOptManager | This class is used to manage constraint variation-FBA optimization processes. |
CvMsFluxIntervalManager | This class is used to manage constraint variation-Mahadevan-Schilling flux interval processes. |
CvObjectiveFunctionManager | This class is used to manage FBA constraint variation-objective function processes. |
CvRevRxnFluxIntervalManager | This class is used to manage constraint variation-constrained reverse reaction flux interval processes. |
CvRxnDeletionManager | This class is used to manage FBA constraint variation-reaction deletion processes. |
CvSimpleFluxIntervalManager | This class is used to manage constraint variation-simple flux interval processes. |
ExtremeCurrentManager | This class is used to manage FBA extreme current processes. |
ExtremeCurrentManager.Rm | |
FbaManager | This abstract class provides a foundation for Flux Balance Analysis process managers. |
FbaOptManager | This class is used to manage basic FBA optimization processes. |
FbaSolverManager | This class is used to manage FBA solver processes. |
FluxActivityManager | This class is used to manage flux activity processes. |
FluxCapManager | This class is used to manage flux cap processes. |
FluxPlasticityManager | This class is used to manage flux plasticity processes. |
InitialPointManager | This class is used to manage initial point processes. |
IntervalVariationManager | This abstract class provides utitlity functions for managing flux interval variation processes. |
MetatoolInputReaderManager | This class is used to manage the conversion of input files for Metatool into SBRT FBA Reaction Files. |
MetatoolInputWriterManager | This class is used to manage the writing of input files for Metatool. |
MetatoolOutputReaderManager | This class is used to manage the writing of input files for Metatool. |
MsFluxIntervalManager | This class is used to manage Mahadevan-Schilling flux interval processes. |
MsFluxomeReducerManager | This class is used to manage the MS fluxome reduction algorithm. |
NetworkInfoManager | This class is used to manage fluxome information processes. |
ObjectiveFunctionManager | This class is used to manage objective function processes. |
PalssonSbmlReaderManager | This class is used to manage the reading of SBML files obtained from Palsson's website. |
RandomConstraintsManager | This class is used to manage random constraints generators. |
RandomFluxVectorManager | This abstract class provides a foundation for random flux vector managers. |
RandomObjectiveManager | This class is used to manage random objective function generators. |
RedundRxnRemoverManager | This class is used to manage redundant reaction remover processes. |
ReverseRxnFluxIntervalManager | This class is used to manage constrained-reverse reaction flux interval processes. |
RevRxnBreakerManager | This class is used to manage reversible reaction breakers. |
RxnDeletionManager | This class is used to manage FBA reaction deletion processes. |
SimpleFluxIntervalManager | This class is used to manage simple flux interval processes. |
SimpleRxnFileTransManager | This class is used to manage the translation of simple reaction files into Systems Biology Research Tool (SBRT) FBA Reaction Files. |
SlpCycleIdManager | This class is used to manage steady state cycle identification. |
WwFluxomeReducerManager | This class is used to manage the WW fluxome reduction algorithm. |
Provides classes and interfaces for creating Flux Balance Analysis process managers.
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