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Packages that use MapOutputFile | |
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sbrt.shell.io | Provides classes and interfaces for reading and writing files. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of MapOutputFile in sbrt.shell.io |
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Subinterfaces of MapOutputFile in sbrt.shell.io | |
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interface |
MapTextOutputFile<K,V>
This interface is used to represent output files that maps can be written to as text. |
Classes in sbrt.shell.io that implement MapOutputFile | |
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class |
AbstractMapOutputFile<K,V>
This abstract class is a skeleton implementation of MapTextOutputFile. |
class |
ComoFile<K,V>
This class is used to write maps to text files in a column-oriented way. |
class |
RomoFile<K,V>
This class is used to write maps to text files in a row-oriented way. |
class |
SmoFile<K,V>
This class is used to write serialized maps to output files. |
Uses of MapOutputFile in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return MapOutputFile | |
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static MapOutputFile<java.lang.String,java.lang.Double> |
InitialPointManager.getFluxVectorFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns an empty output file that is suitable for storing a single flux vector. |
static MapOutputFile<java.lang.String,java.lang.Double> |
CdHarFluxVectorManager.getMultiFluxVectorOutputFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns an empty output file that is suitable for storing multiple flux vectors. |
static MapOutputFile<java.lang.String,java.lang.Double> |
FbaManager.getMultiFluxVectorOutputFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns an empty output file that is suitable for storing multiple flux vectors. |
static MapOutputFile<java.lang.String,java.lang.Double> |
FbaManager.getMultiFluxVectorOutputFile(java.lang.String fileName,
FileFormat fileFormat,
java.util.Set<java.lang.String> rxnNameHeaders,
Fluxome fluxome)
Returns an empty output file that is suitable for storing multiple flux vectors. |
static MapOutputFile<java.lang.String,java.lang.Double> |
InitialPointManager.getPVectorFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns an empty output file that is suitable for storing a single C vector with the name denoted by InitialPointManager.P_VECTOR_FILE_NAME in the provided input. |
static MapOutputFile<java.lang.String,java.lang.Double> |
FbaManager.getSingleFluxVectorOutputFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns an empty output file that is suitable for storing a single flux vector. |
static MapOutputFile<java.lang.String,java.lang.Double> |
FbaManager.getSingleFluxVectorOutputFile(java.lang.String fileName,
FileFormat fileFormat,
java.util.Set<java.lang.String> rxnNameHeaders,
Fluxome fluxome)
Returns an empty output file that is suitable for storing a single flux vector. |
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