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java.lang.Objectsbrt.shell.proc.fba.MetatoolOutputReader
public class MetatoolOutputReader
This class is used to parse Metatool output files for the purpose of creating SBRT compliant files.
Constructor Summary | |
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MetatoolOutputReader()
Creates a new Metatool output file reader. |
Method Summary | |
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DoubleMatrix<java.lang.String,java.lang.String> |
getElementaryModes(InputFile<java.lang.String> file,
java.util.List<java.lang.String> orderedRxnNames)
Returns the elementary mode matrix contained in the provided Metatool output file. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public MetatoolOutputReader()
Method Detail |
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public DoubleMatrix<java.lang.String,java.lang.String> getElementaryModes(InputFile<java.lang.String> file, java.util.List<java.lang.String> orderedRxnNames)
file
- a file produced by Metatool.orderedRxnNames
- the reactions corresponding to each matrix column.
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