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java.lang.Objectsbrt.kernel.fba.comp.RedundRxnRemover
public class RedundRxnRemover
This class is used to remove "redundant" reactions from fluxomes. If a fluxome contains two stoichiometrically equivalent reactions, one of them is considered redundant.
Constructor Summary | |
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RedundRxnRemover()
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Method Summary | |
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static java.util.Collection<java.util.Set<java.lang.String>> |
getEquivRxns(Fluxome fluxome)
Returns the equivalent reactions contained in the provided fluxome. |
static IrrevRxnFluxome |
remove(IrrevRxnFluxome fluxome)
Returns a fluxome for which all "redundant" reactions have been eliminated. |
static MixedFluxome |
remove(MixedFluxome fluxome)
Returns a fluxome for which all "redundant" reactions have been eliminated. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public RedundRxnRemover()
Method Detail |
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public static MixedFluxome remove(MixedFluxome fluxome)
fluxome
- a fluxome.
getEquivRxns(Fluxome)
public static IrrevRxnFluxome remove(IrrevRxnFluxome fluxome)
fluxome
- a fluxome.
getEquivRxns(Fluxome)
public static java.util.Collection<java.util.Set<java.lang.String>> getEquivRxns(Fluxome fluxome)
fluxome
- a fluxome.
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