Uses of Interface
sbrt.kernel.fba.ExchangeRxn

Packages that use ExchangeRxn
sbrt.kernel.fba Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
 

Uses of ExchangeRxn in sbrt.kernel.fba
 

Classes in sbrt.kernel.fba that implement ExchangeRxn
 class AbstractExchangeRxn
          This class is a skeleton implementation of ExchangeRxn.
 class RevExchRxn
          This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system.
 class SinkRxn
          This class is used to represent exchange reactions that transport chemicals from a chemical system to its surroundings.
 class SourceRxn
          This class is used to represent exchange reactions that transport chemicals to a chemical system from its surroundings.
 

Methods in sbrt.kernel.fba that return ExchangeRxn
 ExchangeRxn MixedFluxomeV1.getExchangeRxn(java.lang.String reactionName)
          Returns the exchange reaction in this fluxome with the provided name.
 ExchangeRxn IrrevRxnFluxomeV1.getExchangeRxn(java.lang.String reactionName)
          Returns the exchange reaction in this fluxome with the provided name.
 ExchangeRxn MixedFluxome.getExchangeRxn(java.lang.String rxnName)
          Returns the exchange reaction in this fluxome with the provided name.
 

Methods in sbrt.kernel.fba that return types with arguments of type ExchangeRxn
 java.util.Map<java.lang.String,ExchangeRxn> MixedFluxomeV1.getExchangeRxns()
          Returns all of the exchange reactions contained in this fluxome.
 java.util.Map<java.lang.String,? extends ExchangeRxn> Fluxome.getExchangeRxns()
          Returns all of the exchange reactions contained in this fluxome.
 java.util.Map<java.lang.String,ExchangeRxn> IrrevRxnFluxomeV1.getExchangeRxns()
          Returns all of the exchange reactions contained in this fluxome.
 java.util.Map<java.lang.String,ExchangeRxn> MixedFluxome.getExchangeRxns()
          Returns all of the exchange reactions contained in this fluxome.
 java.util.Map<java.lang.String,ExchangeRxn> MixedFluxomeV1.getExchangeRxns(java.util.Collection<java.lang.String> rxnNames)
          Returns the exchange reactions with the provided names.
 java.util.Map<java.lang.String,ExchangeRxn> MixedFluxome.getExchangeRxns(java.util.Collection<java.lang.String> rxnNames)
          Returns the exchange reactions with the provided names.
 

Uses of ExchangeRxn in sbrt.kernel.fba.proc
 

Methods in sbrt.kernel.fba.proc that return types with arguments of type ExchangeRxn
 java.util.Map<java.lang.String,ExchangeRxn> RevRxnBreakerProcess.breakRxn(java.lang.String rxnId, RevExchRxn rxn)
          Breaks a reversible exchange reaction into a pair of irreversible source and sink exchange reactions.