Uses of Class
sbrt.kernel.fba.comp.FbaOptComputer

Packages that use FbaOptComputer
sbrt.kernel.fba.comp Provides classes and interfaces for performing Flux Balance Analysis computations. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of FbaOptComputer in sbrt.kernel.fba.comp
 

Constructors in sbrt.kernel.fba.comp with parameters of type FbaOptComputer
AbstractFluxIntervalComputer(FbaOptComputer computer)
          Constructs a new flux interval computer with the default zero cutoff.
AbstractFluxIntervalComputer(FbaOptComputer computer, double zeroCutoff)
          Constructs a new flux interval computer with the provided zero cutoff.
FastMsFluxRangeComputer(FbaOptComputer computer, java.util.Map<java.lang.String,java.util.Set<LinearComb<java.lang.String>>> fluxCaps, LinearSystemSolution<java.lang.String> systemSolution, double zeroCutoff)
          Constructs a new flux interval computer.
InitialPointComputer(FbaOptComputer computer)
          Constructs a new initial point, or flux vector, computer.
MsFluxIntervalComputer(FbaOptComputer computer, java.util.Map<java.lang.String,java.util.Set<LinearComb<java.lang.String>>> fluxCaps)
          Constructs a new Mahadevan-Schilling flux interval computer.
MsFluxIntervalComputer(FbaOptComputer computer, java.util.Map<java.lang.String,java.util.Set<LinearComb<java.lang.String>>> fluxCaps, double zeroCutoff)
          Constructs a new Mahadevan-Schilling flux interval computer.
ReverseRxnFluxIntervalComputer(FbaOptComputer computer, double zeroCutoff)
          Constructs a new flux interval computer.
RxnDeletionComputer(FbaOptComputer computer)
          Constructs a new reaction deletion computer.
SimpleFluxIntervalComputer(FbaOptComputer computer, double zeroCutoff)
          Constructs a new flux interval computer.
 

Uses of FbaOptComputer in sbrt.kernel.fba.proc
 

Constructors in sbrt.kernel.fba.proc with parameters of type FbaOptComputer
CvFbaOptimizationExperiment(FbaOptComputer computer)
          Constructs a new constraint-variation FBA optimization experiment.
CvObjectiveFunctionProcess(FbaOptComputer computer)
          Constructs a new constraint-variation objective function experiment.
FbaOptimizationProcess(FbaOptComputer computer)
          Constructs a new FBA optimization experiment.
ObjectiveFunctionAnalysis(FbaOptComputer computer)
          Constructs a new objective function experiment.
StoichVariationProcess(FbaOptComputer computer)
          Constructs a new constraint-variation FBA optimization process.
 

Uses of FbaOptComputer in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return FbaOptComputer
static FbaOptComputer FbaOptManager.getComputer(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out)
          Creates and returns an FBA optimization computer based on the provided input.
static FbaOptComputer InitialPointManager.getComputer(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out)
          Creates and returns an FBA optimization computer based on the provided input.