Uses of Class
sbrt.kernel.fba.comp.FbaOptimizer.Results

Packages that use FbaOptimizer.Results
sbrt.kernel.fba.comp Provides classes and interfaces for performing Flux Balance Analysis computations. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of FbaOptimizer.Results in sbrt.kernel.fba.comp
 

Methods in sbrt.kernel.fba.comp that return FbaOptimizer.Results
 FbaOptimizer.Results RxnDeletionComputer.delete(java.util.Set<java.lang.String> rxnNames)
          Computes and returns the results of deleting the reactions whose names appear in the provided set.
 FbaOptimizer.Results FbaOptimizer.getMax(MathExpr<?> objective)
          Returns the results of computing the maximum value of the provided objective function.
 FbaOptimizer.Results FbaOptimizer.getMin(MathExpr<?> objective)
          Returns the results of computing the minimum value of the provided objective function.
 FbaOptimizer.Results FbaOptimizer.getOptimal(MathExpr<?> objective, OptSense sense)
          Returns the results of computing the optimal value of the provided objective function.
 FbaOptimizer.Results FbaOptimizer.getOptimal(java.lang.String reactionName, OptSense sense)
          Returns the results of computing the optimal flux of the reaction with the provided name.
 

Uses of FbaOptimizer.Results in sbrt.kernel.fba.proc
 

Method parameters in sbrt.kernel.fba.proc with type arguments of type FbaOptimizer.Results
 void CvFbaOptProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void CatalystDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void RxnDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void CvRxnDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void FbaOptProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Computes the optimal value of the current objective function and adds the results to the provided results manager via its ResultsManager.addData(Object) method.
 void CvObjectiveFunctionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void ObjFunAnalysis.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void CvCatalystDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 

Uses of FbaOptimizer.Results in sbrt.shell.io.fba
 

Methods in sbrt.shell.io.fba with type parameters of type FbaOptimizer.Results
<S extends FbaOptimizer.Results>
void
ColumnOrFbaOptOutputFile.addData(S results)
          Writes the appropriate values in the provided FbaOptimizer.Results to this file.
 

Methods in sbrt.shell.io.fba with parameters of type FbaOptimizer.Results
 void SerFbaOptOutputFile.addData(FbaOptimizer.Results results)
          Writes the appropriate values in the provided FbaOptimizer.Results to this file.
 void RowOrFbaOptOutputFile.addData(FbaOptimizer.Results results)
          Writes the appropriate values in the provided FbaOptimizer.Results to this file.
 

Uses of FbaOptimizer.Results in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return types with arguments of type FbaOptimizer.Results
static
<F extends Fluxome>
MultiOutputFiles<ColumnOrFbaOptOutputFile<F>,FbaOptimizer.Results>
FbaOptManager.getMultiColOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, F fluxome)
          Returns a source of column-oriented FBA optimization output files.
static
<F extends Fluxome>
MultiOutputFiles<? extends FbaOptOutputFile<F>,FbaOptimizer.Results>
FbaOptManager.getMultiFileOutput(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, F fluxome)
          Returns a source of FBA optimization output files.
static
<F extends Fluxome>
MultiOutputFiles<RowOrFbaOptOutputFile<F>,FbaOptimizer.Results>
FbaOptManager.getMultiRowOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, F fluxome)
          Returns a source of row-oriented FBA optimization output files.
static
<F extends Fluxome>
MultiOutputFiles<SerFbaOptOutputFile<F>,FbaOptimizer.Results>
FbaOptManager.getMultiSerOutputFiles(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, F fluxome)
          Returns a source of serialized FBA optimization output files.