Uses of Interface
sbrt.shell.io.MapInputFile

Packages that use MapInputFile
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of MapInputFile in sbrt.shell.io
 

Subinterfaces of MapInputFile in sbrt.shell.io
 interface MapTextInputFile<K,V>
          This interface is used to represent text-based input files that contain maps.
 

Classes in sbrt.shell.io that implement MapInputFile
 class AbstractMapInputFile<K,V>
          This abstract class is a skeleton implemenation of text-based map input files.
 class ComiFile<K,V>
          This class is used to read column-oriented map input files.
 class ProcessInputFile
          This class is used to represent process input files.
 class RomiFile<K,V>
          This class is used to read row-oriented map input files.
 class SerializedMapInputFile<K,V>
          This class is used to read input files containing serialized maps.
 

Uses of MapInputFile in sbrt.shell.io.fba
 

Classes in sbrt.shell.io.fba that implement MapInputFile
 class FluxCapInputFile
          This class is used to read files containing flux caps.
 

Uses of MapInputFile in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return MapInputFile
static MapInputFile<java.lang.String,Interval> FluxPlasticityManager.getFluxIntervalFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns the flux interval input with the name denoted by FluxPlasticityManager.FLUX_INTERVAL_FILE in the provided manager input.
static MapInputFile<java.lang.String,Interval> FluxPlasticityManager.getFluxIntervalFile(java.lang.String fileName, Fluxome fluxome)
          Returns the flux interval input file with the provided name.
static MapInputFile<java.lang.String,java.lang.Double> FluxActivityManager.getFluxVectorFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns the flux vector input file specified by the provided input.
static MapInputFile<java.lang.String,java.lang.Double> FluxActivityManager.getFluxVectorFile(java.lang.String fileName, FileFormat format, Fluxome fluxome)
          Returns the flux vector input file with the provided name.