> User's Guide > Flux Balance Analysis > Utilities |
Network
Information Gatherer
This process is used to gather basic information about stoichiometric networks. Here is the set of keywords this process understands, along with a description of their possible corresponding values. See the command line documentation for more information about keyword-value pairs. |
Required Keywords | Possible Values |
Process | FBA Network Information Gatherer |
Reaction File | The name of an FBA Reaction File containing a stoichiometric network. |
Optional Keywords | Possible Values |
Reaction-Catalyst File | The name of the file containing all reaction-catalyst associations. See Reaction-Catalyst Association Files for further information. |
Catalyst File Name | The desired name of the file to which all catalysts will be written. |
Chemical Species File Name | The desired name of the file to which all chemical species will be written. |
Reaction Name File Name | The desired name of the file to which all reaction names will be written. |
Equivalent Reaction File Name | The desired name of the file to which the names of all stoichiometrically equivalent reactions will be written. See Equivalent Reaction Files for further information. |
Equation File Name | The desired name of the file to which the system of linear equations formed by the stoichiometric network will be written. See Linear Equation Files for addtional information. |
Stoichiometry Matrix File Name | The desired name of the file to which the entire stoichiometry matrix will be written. |
ExamplesClick here for an example. |