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java.lang.Objectsbrt.kernel.fba.comp.WwFluxomeReducer
public class WwFluxomeReducer
This class is used to reduce the size of fluxomes for the purpose of identifying the steady state cycles they contain. It is an implementation of the algorithm described by Wright and Wagner (WW).
Constructor Summary | |
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WwFluxomeReducer(ProgramSolver<java.lang.Object,java.lang.Object> solver)
Constructs a fluxome reducer from the provided linear program solver. |
Method Summary | |
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ProgressMonitor |
getProgress()
Returns a progress monitor for this fluxome reducer. |
IrrevRxnFluxome |
makeFluxome(IrrevRxnFluxome fluxome)
Returns the sub-fluxome resulting from network reduction. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public WwFluxomeReducer(ProgramSolver<java.lang.Object,java.lang.Object> solver)
solver
- the linear program solver with which all optimizations will
be computed.Method Detail |
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public ProgressMonitor getProgress()
getProgress
in interface FluxomeReducer<IrrevRxnFluxome>
public IrrevRxnFluxome makeFluxome(IrrevRxnFluxome fluxome)
makeFluxome
in interface FluxomeReducer<IrrevRxnFluxome>
fluxome
- the fluxome for which a sub-fluxome will be returned.
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