> User's Guide > Flux Balance Analysis > Utilities
Palsson-SBML File Reader

This process is used to read files written in the Systems Biology Markup Language (SBML). This process is designed for SBML files obtained from Dr. Bernhard Palsson's website, but may work for other SBML files as well. Since not all information contained in these SBML files has been standardized, the files generated by this process may require subsequent modification before they can be used by the Systems Biology Research Tool.

Here is the set of keywords this process understands, along with a description of their possible corresponding values. See the command line documentation for more information about keyword-value pairs.


Required Keywords Possible Values
Process Palsson-SBML File Reader
SBML Input File The name of the SBML file containing the in silico organism.
Optional Keywords Possible Values
Reaction File Name The name of the file to which reactions will be written.
Gene File Name The name of the file to which reaction-gene associations will be written.
Protein File Name The name of the file to which reaction-protein associations will be written.
Flux Vector File Name The name of the file to which the flux vector will be written.
Flux Bounds File Name The name of the file to which the flux bounds will be written.

Examples

Click here for an example.