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Packages that use FbaOptOutputFile | |
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sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of FbaOptOutputFile in sbrt.shell.io.fba |
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Classes in sbrt.shell.io.fba that implement FbaOptOutputFile | |
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class |
ColumnOrFbaOptOutputFile<F extends Fluxome>
This class is used to write column-oriented output files containing FBA optimization data. |
class |
RowOrFbaOptOutputFile<F extends Fluxome>
This class is used to write row-oriented output files containing FBA optimization data. |
class |
SerFbaOptOutputFile<F extends Fluxome>
This class is used to write output files containing FBA optimization data as serialized maps. |
Uses of FbaOptOutputFile in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return FbaOptOutputFile | ||
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static
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FbaOptManager.getMultiResultsOutputFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
F fluxome)
Returns an empty output file that is suitable for storing multiple FBA optimization results. |
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static
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FbaOptManager.getMultiResultsOutputFile(java.lang.String fileName,
FileFormat fileFormat,
java.util.Set<java.lang.String> dataHeaders,
F fluxome)
Returns an empty output file that is suitable for storing multiple FBA optimization results. |
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static
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FbaOptManager.getSingleResultOutputFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
F fluxome)
Returns an empty output file that is suitable for storing a single FBA optimization result. |
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static
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FbaOptManager.getSingleResultOutputFile(java.lang.String fileName,
FileFormat fileFormat,
java.util.Set<java.lang.String> dataHeaders,
F fluxome)
Returns an empty output file that is suitable for storing a single FBA optimization result. |
Methods in sbrt.shell.mng.fba that return types with arguments of type FbaOptOutputFile | ||
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static
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FbaOptManager.getMultiFileOutput(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
F fluxome)
Returns a source of FBA optimization output files. |
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