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Packages that use LinearSystemSolution | |
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sbrt.ext.mma.algebra | Provides classes that allow communication with Mathematica for the purposes of algebra. |
sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.kernel.math.algebra | Provides classes and interfaces for creating objects relevant to algebra. |
sbrt.kernel.math.algebra.proc | Provides classes and interfaces for executing algebra-related processes. |
sbrt.kernel.math.geom | Provides classes and interfaces for creating objects relevant to computational geometry. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of LinearSystemSolution in sbrt.ext.mma.algebra |
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Methods in sbrt.ext.mma.algebra that return LinearSystemSolution | |
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LinearSystemSolution<V> |
MathematicaSolver.solve(java.util.Map<LinearComb<V>,java.lang.Double> equations)
Computes and returns a solution to the provided system of linear equations. |
Uses of LinearSystemSolution in sbrt.kernel.fba.comp |
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Methods in sbrt.kernel.fba.comp that return LinearSystemSolution | |
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static LinearSystemSolution<java.lang.String> |
FbaSolver.solve(Fluxome fluxome,
LinearSystemSolver<java.lang.String> solver)
Solves Sv = 0, where S is the stoichiometry matrix of the provided fluxome and v is the vector of fluxes. |
Constructors in sbrt.kernel.fba.comp with parameters of type LinearSystemSolution | |
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CdHarFluxComp(F fluxome,
LinearSystemSolution<java.lang.String> systemSolution)
Constructs a new random flux vector computer for the provided fluxome. |
Uses of LinearSystemSolution in sbrt.kernel.fba.proc |
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Method parameters in sbrt.kernel.fba.proc with type arguments of type LinearSystemSolution | |
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void |
FbaSolverProcess.run(ResultsManager<LinearSystemSolution<java.lang.String>> resultsManager)
Solves Sv = 0 and adds the result to the provided manager. |
Uses of LinearSystemSolution in sbrt.kernel.math.algebra |
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Classes in sbrt.kernel.math.algebra that implement LinearSystemSolution | |
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class |
HashLinearSystemSolution<V>
This class is a concrete implemenation of LinearSystemSolution. |
Methods in sbrt.kernel.math.algebra that return LinearSystemSolution | ||
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static
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HashLinearSystemSolution.simplify(LinearSystemSolution<V> solution,
java.util.Map<? extends V,Interval> variableBounds,
double tolerance)
Returns a simplified version of the provided linear system solution given the variable bounds. |
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LinearSystemSolution<V> |
HashLinearSystemSolution.simplify(java.util.Map<?,java.lang.Double> variableValues,
double tolerance)
Computes and returns a simplified solution by plugging in the provided values. |
|
LinearSystemSolution<V> |
LinearSystemSolution.simplify(java.util.Map<?,java.lang.Double> variableValues,
double tolerance)
Computes and returns a simplified solution by plugging in the provided values. |
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LinearSystemSolution<V> |
LinearSystemSolver.solve(java.util.Map<LinearComb<V>,java.lang.Double> equations)
Computes and returns a solution to the provided system of linear equations. |
Methods in sbrt.kernel.math.algebra with parameters of type LinearSystemSolution | ||
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static
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HashLinearSystemSolution.simplify(LinearSystemSolution<V> solution,
java.util.Map<? extends V,Interval> variableBounds,
double tolerance)
Returns a simplified version of the provided linear system solution given the variable bounds. |
Uses of LinearSystemSolution in sbrt.kernel.math.algebra.proc |
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Method parameters in sbrt.kernel.math.algebra.proc with type arguments of type LinearSystemSolution | |
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void |
LinearSolverProcess.run(ResultsManager<LinearSystemSolution<V>> resultsManager)
Solves the system of linear equations and adds the solution to the provided results manager. |
Uses of LinearSystemSolution in sbrt.kernel.math.geom |
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Methods in sbrt.kernel.math.geom with parameters of type LinearSystemSolution | ||
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static
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HashConvexPolytope.make(LinearSystemSolution<V> systemSolution,
java.util.Map<? extends V,Interval> variableBounds,
double tolerance)
Constructs a new convex poltyope from the provided linear system solution and variable bounds. |
Uses of LinearSystemSolution in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return LinearSystemSolution | |
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static LinearSystemSolution<java.lang.String> |
FbaManager.getFluxomeSolution(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome,
double coeffCutoff)
Opens the file denoted by FbaManager.SYSTEM_SOLUTION_FILE in the provided manager input and returns the linear system solution it contains. |
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