Uses of Class
sbrt.kernel.fba.proc.FbaProcess

Packages that use FbaProcess
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of FbaProcess in sbrt.kernel.fba.proc
 

Subclasses of FbaProcess in sbrt.kernel.fba.proc
 class AbstractCvFbaOptProcess<F extends Fluxome,R>
          This class is used to represent constraint-variation Flux Balance Analysis processes.
 class CatalystDeletionProcess<F extends CatalyzedFluxome>
          This class is used to perform catalyst deletion processes.
 class CdHarFluxVectorProcess<F extends Fluxome>
          This class is used to perform coordinate direction hit-and-run flux vector processes.
 class CvCatalystDeletionProcess<F extends CatalyzedFluxome>
          This class is used to perform constraint-variation catalyst deletion processes.
 class CvFbaOptProcess<F extends Fluxome>
          This class is used to perform constraint-variation FBA optimization processes.
 class CvFluxIntervalProcess<F extends Fluxome>
          This class is used to perform constraint variation flux interval processes.
 class CvObjectiveFunctionProcess<F extends Fluxome>
          This class is used to perform constraint-variation objective function processes.
 class CvRxnDeletionProcess<F extends Fluxome>
          This class is used to perform constraint-variation reaction deletion processes.
 class CycleIdProcess<F extends Fluxome>
          This class is used to execute steady state cycle identification processes.
 class ExtremeCurrentProcess<F extends IrrevRxnFluxome>
          This class is used to identify the extreme currents in stoichiometric networks.
 class FbaOptProcess<F extends Fluxome>
          This class is used to perform a basic Flux Balance Analysis optimization.
 class FbaSolverProcess<F extends Fluxome>
          This class is used to solve the equation Sv = 0.
 class FluxActivityProcess<F extends Fluxome>
          This class is used to analyze the activity of fluxes.
 class FluxCapProcess
          This class is used to perform a flux cap identification.
 class FluxIntervalProcess<F extends Fluxome>
          This class is used to perform flux interval computations.
 class FluxomeReducerProcess<T extends Fluxome>
          This class is used to execute fluxome reduction processes.
 class FluxPlasticityProcess<F extends Fluxome>
          This class is used to analyze the plasticity of fluxes.
 class InitialPointGenerator<F extends Fluxome>
          This class is used to execute initial point generators.
 class NetworkInfoProcess<F extends CatalyzedFluxome>
          This class is used to gather basic information about a fluxome.
 class ObjFunAnalysis<F extends Fluxome>
          This class is used to perform objective function analyses.
 class RandConstGeneratorV1<F extends Fluxome>
          This class is used to generate random flux constraints.
 class RandomObjectiveGenerator<F extends Fluxome>
          This class is used to generate random objective functions.
 class RedundRxnRemoverProcess
          This class is used to remove redundant reactions from a fluxome.
 class RxnDeletionProcess<F extends Fluxome>
          This class is used to perform reaction deletion processes.
 class SvCdHarFluxVectorProcess<F extends Fluxome>
          This class is used to perform space variation coordinate direction hit-and-run flux vector processes.
 class SvInitialPointProcess<F extends Fluxome>
          This class is used to perform flux space variation initial point processes.
 

Uses of FbaProcess in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba with parameters of type FbaProcess
static ApplicationException FbaOptManager.interpret(ConstraintViolationException e, FbaProcess<?,?> process)
          Returns an ApplicationException whose message describes the error that ocurred.
static ApplicationException FbaOptManager.interpret(FbaOptException e, FbaProcess<?,?> process)
          Returns an ApplicationException whose message describes the error that ocurred.
static ApplicationException InitialPointManager.interpret(FbaOptException e, FbaProcess<?,?> process)
          Returns an ApplicationException whose message describes the error that ocurred.
static ApplicationException MsFluxIntervalManager.interpret(FluxRangeException e, FbaProcess<?,?> process)
          Returns an ApplicationException whose message describes the error that ocurred.
static ApplicationException FbaOptManager.interpret(java.lang.RuntimeException e, FbaProcess<?,?> process)
          Returns an ApplicationException whose message describes the error that ocurred.