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F
- the fluxome type.public interface FluxIntervalComputer<F extends Fluxome>
This interface is used to represent flux interval computers. Every flux in a fluxome can assume minimum and maximum values, which define an interval. Implementation of this interface must have the ability to compute these flux intervals.
Method Summary | |
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java.util.Map<java.lang.String,Interval> |
getIntervals()
Computes and returns the intervals of every flux in the fluxome used by this flux interval computer. |
java.util.Map<java.lang.String,Interval> |
getIntervals(java.util.Collection<java.lang.String> rxnNames)
Computes and returns the flux intervals of the reactions with the provided names. |
ProgressMonitor |
getProgress()
Returns a progress monitor for this flux interval computer. |
double |
getTolerance()
Returns the amount by which constraints can be violated. |
double |
getZeroCutoff()
Returns the current zero cutoff. |
Methods inherited from interface sbrt.kernel.fba.comp.FluxCvComputer |
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getFluxConstraint, getFluxConstraints, getFluxome, getRxnExprConstraint, getRxnExprConstraints, restoreFluxConstraint, restoreFluxConstraints, restoreFluxConstraints, restoreRxnExprConstraint, restoreRxnExprConstraints, restoreRxnExprConstraints, setFluxConstraint, setFluxConstraints, setRxnExprConstraint, setRxnExprConstraints |
Method Detail |
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java.util.Map<java.lang.String,Interval> getIntervals()
java.util.Map<java.lang.String,Interval> getIntervals(java.util.Collection<java.lang.String> rxnNames)
rxnNames
- a collection of reaction names.
double getZeroCutoff()
double getTolerance()
ProgressMonitor getProgress()
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