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Optimization

These processes are used to optimize objective functions under a variety of conditions.


Processes Brief Descriptions
FBA Optimization Used to compute the optimal value of a single objective function.
Reaction Deletion Used to compute the effect of deleting reactions in a stoichiometric network.
Catalyst Deletion Used to compute the effect of deleting catalysts in a stoichiometric network.
Objective Function Analysis Used to compute the optimal values of multiple objective functions.
Constraint Variation Used to compute the optimal values of a single objective function for multiple sets of flux constraints.
Constraint Variation-Reaction Deletion Used to compute the combined effects of deleting reactions and varying the flux constraints in a stoichiometric network.
Constraint Variation-Catalyst Deletion Used to compute the combined effects of deleting catalysts and varying the flux constraints in a stoichiometric network.
Constraint Variation-Objective Function Analysis Used to compute the optimal values of multiple objective functions for multiple sets of flux constraints.