Package sbrt.kernel.fba.proc

Provides classes and interfaces for executing Flux Balance Analysis processes.

See:
          Description

Class Summary
AbstractCvFbaOptProcess<F extends Fluxome,R> This class is used to represent constraint-variation Flux Balance Analysis processes.
CatalystDeletionProcess<F extends CatalyzedFluxome> This class is used to perform catalyst deletion processes.
CdHarFluxVectorProcess<F extends Fluxome> This class is used to perform coordinate direction hit-and-run flux vector processes.
CvCatalystDeletionProcess<F extends CatalyzedFluxome> This class is used to perform constraint-variation catalyst deletion processes.
CvFbaOptProcess<F extends Fluxome> This class is used to perform constraint-variation FBA optimization processes.
CvFluxIntervalProcess<F extends Fluxome> This class is used to perform constraint variation flux interval processes.
CvObjectiveFunctionProcess<F extends Fluxome> This class is used to perform constraint-variation objective function processes.
CvRxnDeletionProcess<F extends Fluxome> This class is used to perform constraint-variation reaction deletion processes.
CycleIdProcess<F extends Fluxome> This class is used to execute steady state cycle identification processes.
ExtremeCurrentProcess<F extends IrrevRxnFluxome> This class is used to identify the extreme currents in stoichiometric networks.
FbaOptProcess<F extends Fluxome> This class is used to perform a basic Flux Balance Analysis optimization.
FbaProcess<F extends Fluxome,R> This abstract class is used to represent Flux Balance Analysis processes.
FbaSolverProcess<F extends Fluxome> This class is used to solve the equation Sv = 0.
FluxActivityProcess<F extends Fluxome> This class is used to analyze the activity of fluxes.
FluxActivityProcess.Results This class is used to represent the results of a flux activity process.
FluxCapProcess This class is used to perform a flux cap identification.
FluxIntervalProcess<F extends Fluxome> This class is used to perform flux interval computations.
FluxomeReducerProcess<T extends Fluxome> This class is used to execute fluxome reduction processes.
FluxPlasticityProcess<F extends Fluxome> This class is used to analyze the plasticity of fluxes.
FluxPlasticityProcess.Results This class is used to represent the results of a flux plasticity process.
InitialPointGenerator<F extends Fluxome> This class is used to execute initial point generators.
NetworkInfoProcess<F extends CatalyzedFluxome> This class is used to gather basic information about a fluxome.
NetworkInfoProcess.Results<F extends CatalyzedFluxome> This class is used to represent the information gathered about a fluxome.
ObjFunAnalysis<F extends Fluxome> This class is used to perform objective function analyses.
RandConstGeneratorV1<F extends Fluxome> This class is used to generate random flux constraints.
RandomObjectiveGenerator<F extends Fluxome> This class is used to generate random objective functions.
RedundRxnRemoverProcess This class is used to remove redundant reactions from a fluxome.
RevRxnBreakerProcess This class is used to break reversible reactions into pairs of irreversible reactions.
RxnDeletionProcess<F extends Fluxome> This class is used to perform reaction deletion processes.
SvCdHarFluxVectorProcess<F extends Fluxome> This class is used to perform space variation coordinate direction hit-and-run flux vector processes.
SvInitialPointProcess<F extends Fluxome> This class is used to perform flux space variation initial point processes.
 

Package sbrt.kernel.fba.proc Description

Provides classes and interfaces for executing Flux Balance Analysis processes.