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Packages that use SbrtFile | |
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sbrt.shell.io | Provides classes and interfaces for reading and writing files. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng | Provides classes and interfaces for creating process managers. |
Uses of SbrtFile in sbrt.shell.io |
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Subinterfaces of SbrtFile in sbrt.shell.io | |
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interface |
InputFile<E>
This interface is used to represent input files. |
interface |
MapInputFile<K,V>
This interface is used to represent input files that contain maps. |
interface |
MapOutputFile<K,V>
This interface is used to represent output files that maps can be written to. |
interface |
MapTextFile<K,V>
This interface is used to represent text-based files that contain maps. |
interface |
MapTextInputFile<K,V>
This interface is used to represent text-based input files that contain maps. |
interface |
MapTextOutputFile<K,V>
This interface is used to represent output files that maps can be written to as text. |
interface |
OutputFile<T>
This interface is used to represent output files. |
Classes in sbrt.shell.io that implement SbrtFile | |
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class |
AbstractMapInputFile<K,V>
This abstract class is a skeleton implemenation of text-based map input files. |
class |
AbstractMapOutputFile<K,V>
This abstract class is a skeleton implementation of MapTextOutputFile. |
class |
ComiFile<K,V>
This class is used to read column-oriented map input files. |
class |
ComoFile<K,V>
This class is used to write maps to text files in a column-oriented way. |
class |
ProcessInputFile
This class is used to represent process input files. |
class |
RomiFile<K,V>
This class is used to read row-oriented map input files. |
class |
RomoFile<K,V>
This class is used to write maps to text files in a row-oriented way. |
class |
SerializedInputFile<E>
This class is used to read input files containing serialized objects. |
class |
SerializedMapInputFile<K,V>
This class is used to read input files containing serialized maps. |
class |
SerializedOutputFile<E>
This class is used to write serialized objects to output files. |
class |
SmoFile<K,V>
This class is used to write serialized maps to output files. |
class |
TextInputFile<E>
This class is used to read input files containing text. |
class |
TextOutputFile<T>
This class is used to represent output files containing plain text. |
Uses of SbrtFile in sbrt.shell.io.fba |
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Subinterfaces of SbrtFile in sbrt.shell.io.fba | |
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interface |
FbaOptOutputFile<F extends Fluxome>
This interface is used to represent FBA optimization output files. |
Classes in sbrt.shell.io.fba that implement SbrtFile | |
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class |
ColumnOrFbaOptOutputFile<F extends Fluxome>
This class is used to write column-oriented output files containing FBA optimization data. |
class |
FluxCapInputFile
This class is used to read files containing flux caps. |
class |
FluxIntervalInputFile
This class is used to read flux interval input files. |
class |
RowOrFbaOptOutputFile<F extends Fluxome>
This class is used to write row-oriented output files containing FBA optimization data. |
class |
RxnNamExprSetInputFile<E extends MathExpr<S>,S>
This class is used to read files containing a set of reaction name expressions. |
class |
SerFbaOptOutputFile<F extends Fluxome>
This class is used to write output files containing FBA optimization data as serialized maps. |
Uses of SbrtFile in sbrt.shell.mng |
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Methods in sbrt.shell.mng with parameters of type SbrtFile | |
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static void |
AbstractProcessManager.closeFile(SbrtFile file,
java.io.PrintWriter out)
Closes the provided results manager and prints a descriptive message to the provided print writer. |
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