Package sbrt.kernel.fba

Provides classes and interfaces for creating objects relevant to Flux Balance Analysis.

See:
          Description

Interface Summary
CatalyzedFluxome This interface is used to represent fluxomes with catalyzed reactions.
ChemRxn This interface is used to represent chemical reactions.
ExchangeRxn This interface is used to represent exchange reactions.
Fluxome This interface is used to represent fluxomes for use in Flux Balance Analysis.
IrrevRxnFluxome This interface is used to represent fluxomes that contain only irreversible reactions.
MixedFluxome This interface is used to represent fluxomes that contain multiple types of chemical reactions.
 

Class Summary
AbstractExchangeRxn This class is a skeleton implementation of ExchangeRxn.
AbstractRxn This class is a skeleton implementation of ChemicalRxn.
FluxConstraints This class is used to group sets of flux constraints.
IrrevRxn This class is used to represent irreversible chemical reactions.
IrrevRxnFluxomeV1 This class is a concrete implementation of IrrevRxnFluxome.
MixedFluxomeV1 This class is a concrete implementation of MixedFluxome.
RevExchRxn This class is used to represent reversible exchange reactions, that is, exchange reactions that can both supply and consume chemical species to and from a chemical system.
RevRxn This class is used to represent reversible chemical reactions.
RxnComparer This class is used to compare chemical reactions.
SinkRxn This class is used to represent exchange reactions that transport chemicals from a chemical system to its surroundings.
SourceRxn This class is used to represent exchange reactions that transport chemicals to a chemical system from its surroundings.
 

Package sbrt.kernel.fba Description

Provides classes and interfaces for creating objects relevant to Flux Balance Analysis.