Uses of Interface
sbrt.shell.text.fba.FbaOptFileLineFormat

Packages that use FbaOptFileLineFormat
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.text.fba Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. 
 

Uses of FbaOptFileLineFormat in sbrt.shell.io.fba
 

Methods in sbrt.shell.io.fba that return FbaOptFileLineFormat
 FbaOptFileLineFormat ColumnOrFbaOptOutputFile.getFbaOptFileLineFormat()
          Returns the FBA optimization file line format used to write data strings to this file.
 FbaOptFileLineFormat SerFbaOptOutputFile.getFbaOptFileLineFormat()
          Returns the FBA optimization file line format used to supply a header object for objective values.
 FbaOptFileLineFormat RowOrFbaOptOutputFile.getFbaOptFileLineFormat()
          Returns the FBA optimization file line format used to write data strings to this file.
 FbaOptFileLineFormat FbaOptOutputFile.getFbaOptFileLineFormat()
          Returns the FBA optimization output file line format.
 FbaOptFileLineFormat CofoofSource.getFbaOptFileLineFormat()
          Returns the FBA optimization file line format used to write data strings to files produced by this source.
 

Constructors in sbrt.shell.io.fba with parameters of type FbaOptFileLineFormat
CofoofSource(java.util.Iterator<java.lang.String> fileNameSource, FileFormat fileFormat, java.util.Set<java.lang.String> columnHeaders, FbaOptFileLineFormat fbaFormat)
          Constructs a new source of column-oriented FBA optimization output files.
CofoofSource(java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, FileFormat fileFormat, java.util.Set<java.lang.String> columnHeaders, FbaOptFileLineFormat fbaFormat)
          Constructs a new source of column-oriented FBA optimization output files.
ColumnOrFbaOptOutputFile(java.lang.String fileName, FileFormat fileFormat, java.util.Set<java.lang.String> columnHeaders, FbaOptFileLineFormat fbaFormat)
          Constructs a new column-oriented FBA optimization output file.
RofoofSource(java.util.Iterator<java.lang.String> fileNameSource, FileFormat fileFormat, java.util.Set<java.lang.String> rowHeaders, FbaOptFileLineFormat fbaFormat)
          Constructs a new source of row-oriented FBA optimization output files.
RofoofSource(java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, FileFormat fileFormat, java.util.Set<java.lang.String> rowHeaders, FbaOptFileLineFormat fbaFormat)
          Constructs a new source of row-oriented FBA optimization output files.
RowOrFbaOptOutputFile(java.lang.String fileName, FileFormat fileFormat, FbaOptFileLineFormat fbaFormat)
          Constructs a new row-oriented FBA optimization output file.
RowOrFbaOptOutputFile(java.lang.String fileName, FileFormat fileFormat, java.util.Set<java.lang.String> rowHeaders, FbaOptFileLineFormat fbaFormat)
          Constructs a new row-oriented FBA optimization output file.
SerFbaOptOutputFile(java.lang.String fileName, FileFormat fileFormat, java.util.Set<java.lang.String> filterKeys, FbaOptFileLineFormat fbaFormat)
          Constructs a new serialized FBA optimization output file.
SfoofSource(java.util.Iterator<java.lang.String> fileNameSource, FileFormat fileFormat, java.util.Set<java.lang.String> filterKeys, FbaOptFileLineFormat fbaFormat)
          Constructs a new source of serialized FBA optimization output files.
SfoofSource(java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, FileFormat fileFormat, java.util.Set<java.lang.String> filterKeys, FbaOptFileLineFormat fbaFormat)
          Constructs a new source of serialized FBA optimization output files.
 

Uses of FbaOptFileLineFormat in sbrt.shell.text.fba
 

Classes in sbrt.shell.text.fba that implement FbaOptFileLineFormat
 class FbaOptFileLineFormatV1
          This class is a concrete implementation of FbaOptFileLineFormat.