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Packages that use FbaOptimizer.Results | |
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sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of FbaOptimizer.Results in sbrt.kernel.fba.comp |
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Methods in sbrt.kernel.fba.comp that return FbaOptimizer.Results | |
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FbaOptimizer.Results |
RxnDeletionComputer.delete(java.util.Set<java.lang.String> rxnNames)
Computes and returns the results of deleting the reactions whose names appear in the provided set. |
FbaOptimizer.Results |
FbaOptimizer.getMax(MathExpr<?> objective)
Returns the results of computing the maximum value of the provided objective function. |
FbaOptimizer.Results |
FbaOptimizer.getMin(MathExpr<?> objective)
Returns the results of computing the minimum value of the provided objective function. |
FbaOptimizer.Results |
FbaOptimizer.getOptimal(MathExpr<?> objective,
OptSense sense)
Returns the results of computing the optimal value of the provided objective function. |
FbaOptimizer.Results |
FbaOptimizer.getOptimal(java.lang.String reactionName,
OptSense sense)
Returns the results of computing the optimal flux of the reaction with the provided name. |
Uses of FbaOptimizer.Results in sbrt.kernel.fba.proc |
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Method parameters in sbrt.kernel.fba.proc with type arguments of type FbaOptimizer.Results | |
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void |
CvFbaOptProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
CatalystDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
RxnDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
CvRxnDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
FbaOptProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Computes the optimal value of the current objective function and adds the results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
CvObjectiveFunctionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
ObjFunAnalysis.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
void |
CvCatalystDeletionProcess.run(ResultsManager<FbaOptimizer.Results> resultsManager)
Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method. |
Uses of FbaOptimizer.Results in sbrt.shell.io.fba |
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Methods in sbrt.shell.io.fba with type parameters of type FbaOptimizer.Results | ||
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ColumnOrFbaOptOutputFile.addData(S results)
Writes the appropriate values in the provided FbaOptimizer.Results to this file. |
Methods in sbrt.shell.io.fba with parameters of type FbaOptimizer.Results | |
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void |
SerFbaOptOutputFile.addData(FbaOptimizer.Results results)
Writes the appropriate values in the provided FbaOptimizer.Results to this file. |
void |
RowOrFbaOptOutputFile.addData(FbaOptimizer.Results results)
Writes the appropriate values in the provided FbaOptimizer.Results to this file. |
Uses of FbaOptimizer.Results in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return types with arguments of type FbaOptimizer.Results | ||
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static
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FbaOptManager.getMultiColOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
F fluxome)
Returns a source of column-oriented FBA optimization output files. |
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static
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FbaOptManager.getMultiFileOutput(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
F fluxome)
Returns a source of FBA optimization output files. |
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static
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FbaOptManager.getMultiRowOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
F fluxome)
Returns a source of row-oriented FBA optimization output files. |
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static
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FbaOptManager.getMultiSerOutputFiles(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
F fluxome)
Returns a source of serialized FBA optimization output files. |
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