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java.lang.Objectsbrt.shell.io.fba.CofoofSource<F>
F
- the fluxome type.public class CofoofSource<F extends Fluxome>
This class is used to provide a source of column-oriented FBA optimization output files.
Constructor Summary | |
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CofoofSource(java.util.Iterator<java.lang.String> fileNameSource,
FileFormat fileFormat,
java.util.Set<java.lang.String> columnHeaders,
FbaOptFileLineFormat fbaFormat)
Constructs a new source of column-oriented FBA optimization output files. |
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CofoofSource(java.util.Iterator<java.lang.String> fileNameSource,
java.lang.String fileNameSourceName,
FileFormat fileFormat,
java.util.Set<java.lang.String> columnHeaders,
FbaOptFileLineFormat fbaFormat)
Constructs a new source of column-oriented FBA optimization output files. |
Method Summary | |
---|---|
FbaOptFileLineFormat |
getFbaOptFileLineFormat()
Returns the FBA optimization file line format used to write data strings to files produced by this source. |
FileFormat |
getFileFormat()
Returns the file format used to create files of type ColumnOrFbaOptOutputFile. |
boolean |
hasNext()
Indicates if this iterator can return another file using the next() method. |
ColumnOrFbaOptOutputFile<F> |
next()
Returns the next column-oriented map output file with the next name returned by the file name source. |
void |
remove()
Throws UnsupportedOperationException . |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public CofoofSource(java.util.Iterator<java.lang.String> fileNameSource, FileFormat fileFormat, java.util.Set<java.lang.String> columnHeaders, FbaOptFileLineFormat fbaFormat)
fileNameSource
- the file name source.fileFormat
- the file format used to write files.columnHeaders
- a set of valid column headers that will appear in
the files produced by this source. This set can consist of reaction names
and the objective function header. If null
, all values from
every added set of results will be written to this file.fbaFormat
- the map format used to write data strings to the files
produced by this source.
java.lang.NullPointerException
- if any argument except columnHeaders
is null
.public CofoofSource(java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, FileFormat fileFormat, java.util.Set<java.lang.String> columnHeaders, FbaOptFileLineFormat fbaFormat)
fileNameSource
- the file name source.fileNameSourceName
- the name of the file name source.fileFormat
- the file format used to write files.columnHeaders
- a set of valid column headers that will appear in
the files produced by this source. This set can consist of reaction names
and the objective function header. If null
, all values from
every added set of results will be written to this file.fbaFormat
- the map format used to write data strings to the files
produced by this source.
java.lang.NullPointerException
- if any argument except columnHeaders
is null
.Method Detail |
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public FileFormat getFileFormat()
public FbaOptFileLineFormat getFbaOptFileLineFormat()
public boolean hasNext()
next()
method.
hasNext
in interface java.util.Iterator<ColumnOrFbaOptOutputFile<F extends Fluxome>>
true
if this iterator can return another file;
false
otherwise.public ColumnOrFbaOptOutputFile<F> next()
next
in interface java.util.Iterator<ColumnOrFbaOptOutputFile<F extends Fluxome>>
public void remove()
UnsupportedOperationException
.
remove
in interface java.util.Iterator<ColumnOrFbaOptOutputFile<F extends Fluxome>>
java.lang.UnsupportedOperationException
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