sbrt.shell.text.fba
Interface FluxCapFormat

All Superinterfaces:
Format, MapFormat<java.lang.String,java.util.Set<LinearComb<java.lang.String>>>
All Known Implementing Classes:
FluxCapFormatV1

public interface FluxCapFormat
extends MapFormat<java.lang.String,java.util.Set<LinearComb<java.lang.String>>>

This interface is used to represent the formats of lines of flux cap-containing files.

Author:
This interface was written and documented by Jeremiah Wright while in the Wagner lab.

Method Summary
 Fluxome getFluxome()
          Returns the fluxome used to verify reaction names.
 
Methods inherited from interface sbrt.shell.text.MapFormat
formatKey, formatKeys, formatPair, formatPair, formatValue, formatValues, formatValues, parseAllKeys, parseAllPairs, parseAllValues, parseAllValues, parseKey, parsePair, parseValue
 

Method Detail

getFluxome

Fluxome getFluxome()
Returns the fluxome used to verify reaction names.

Returns:
the fluxome used to verify reaction names.