sbrt.shell.proc.fba
Class MetatoolInputReader

java.lang.Object
  extended by sbrt.shell.proc.fba.MetatoolInputReader

public class MetatoolInputReader
extends java.lang.Object

This class is used to parse Metatool input files for the purpose of converting them to FBA Reaction Files.

Author:
This class was written and documented by Jeremiah Wright while in the Wagner lab.

Nested Class Summary
static class MetatoolInputReader.Results
          This class is used to store the results of parsing a Metatool input file.
 
Field Summary
static java.lang.String CAT
          The Metatool keyword -CAT.
static java.lang.String ENZIRREV
          The Metatool keyword -ENZIRREV.
static java.lang.String ENZREV
          The Metatool keyword -ENZREV.
static java.lang.String METEXT
          The Metatool keyword -METEXT.
static java.lang.String METINT
          The Metatool keyword -METINT.
 
Method Summary
static void main(java.lang.String[] args)
          Used for testing purposes.
static MetatoolInputReader.Results parse(java.util.List<java.lang.String> fileLines)
          Parses the lines of a Metatool input file.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

ENZREV

public static final java.lang.String ENZREV
The Metatool keyword -ENZREV.

See Also:
Constant Field Values

ENZIRREV

public static final java.lang.String ENZIRREV
The Metatool keyword -ENZIRREV.

See Also:
Constant Field Values

METINT

public static final java.lang.String METINT
The Metatool keyword -METINT.

See Also:
Constant Field Values

METEXT

public static final java.lang.String METEXT
The Metatool keyword -METEXT.

See Also:
Constant Field Values

CAT

public static final java.lang.String CAT
The Metatool keyword -CAT.

See Also:
Constant Field Values
Method Detail

parse

public static MetatoolInputReader.Results parse(java.util.List<java.lang.String> fileLines)
Parses the lines of a Metatool input file.

Parameters:
fileLines - a list of all lines contained in a Metatool input file.
Returns:
the results of parsing.

main

public static void main(java.lang.String[] args)
Used for testing purposes.

Parameters:
args -