Uses of Class
sbrt.shell.io.TextInputFile

Packages that use TextInputFile
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng Provides classes and interfaces for creating process managers. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of TextInputFile in sbrt.shell.io
 

Methods in sbrt.shell.io that return TextInputFile
static TextInputFile<java.lang.String> TextInputFile.getBasic(java.lang.String fileName)
          Returns a basic text input file.
static TextInputFile<java.lang.String> TextInputFile.getBasic(java.lang.String fileName, FileFormat fileFormat)
          Returns a basic text input file.
 

Constructors in sbrt.shell.io with parameters of type TextInputFile
TextFileLineIterator(TextInputFile<E> file)
          Constructs a new text file line iterator using the provided text input file.
 

Uses of TextInputFile in sbrt.shell.io.fba
 

Subclasses of TextInputFile in sbrt.shell.io.fba
 class RxnNamExprSetInputFile<E extends MathExpr<S>,S>
          This class is used to read files containing a set of reaction name expressions.
 

Uses of TextInputFile in sbrt.shell.mng
 

Methods in sbrt.shell.mng that return TextInputFile
static TextInputFile<java.lang.String> AbstractProcessManager.getFileNameSource(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out)
          Returns the parsed value for AbstractProcessManager.OUTPUT_FILE_NAME_FILE in the provided input and prints a descriptive message to the provided print writer.
 

Uses of TextInputFile in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return TextInputFile
static TextInputFile<LinearComb<java.lang.String>> ObjectiveFunctionManager.getInputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns the file denoted by ObjectiveFunctionManager.OBJ_FUNCT_FILE in the provided manager input.
static TextInputFile<LinearComb<java.lang.String>> ObjectiveFunctionManager.getInputFile(java.lang.String fileName, FileFormat format, Fluxome fluxome)
          Returns the input file with the provided name.
static TextInputFile<LinearComb<java.lang.String>> ObjectiveFunctionManager.getInputFile(java.lang.String fileName, Fluxome fluxome)
          Returns the input file with the provided name.