Uses of Interface
sbrt.shell.io.MapOutputFile

Packages that use MapOutputFile
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of MapOutputFile in sbrt.shell.io
 

Subinterfaces of MapOutputFile in sbrt.shell.io
 interface MapTextOutputFile<K,V>
          This interface is used to represent output files that maps can be written to as text.
 

Classes in sbrt.shell.io that implement MapOutputFile
 class AbstractMapOutputFile<K,V>
          This abstract class is a skeleton implementation of MapTextOutputFile.
 class ComoFile<K,V>
          This class is used to write maps to text files in a column-oriented way.
 class RomoFile<K,V>
          This class is used to write maps to text files in a row-oriented way.
 class SmoFile<K,V>
          This class is used to write serialized maps to output files.
 

Uses of MapOutputFile in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return MapOutputFile
static MapOutputFile<java.lang.String,java.lang.Double> InitialPointManager.getFluxVectorFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing a single flux vector.
static MapOutputFile<java.lang.String,java.lang.Double> CdHarFluxVectorManager.getMultiFluxVectorOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing multiple flux vectors.
static MapOutputFile<java.lang.String,java.lang.Double> FbaManager.getMultiFluxVectorOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing multiple flux vectors.
static MapOutputFile<java.lang.String,java.lang.Double> FbaManager.getMultiFluxVectorOutputFile(java.lang.String fileName, FileFormat fileFormat, java.util.Set<java.lang.String> rxnNameHeaders, Fluxome fluxome)
          Returns an empty output file that is suitable for storing multiple flux vectors.
static MapOutputFile<java.lang.String,java.lang.Double> InitialPointManager.getPVectorFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing a single C vector with the name denoted by InitialPointManager.P_VECTOR_FILE_NAME in the provided input.
static MapOutputFile<java.lang.String,java.lang.Double> FbaManager.getSingleFluxVectorOutputFile(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, Fluxome fluxome)
          Returns an empty output file that is suitable for storing a single flux vector.
static MapOutputFile<java.lang.String,java.lang.Double> FbaManager.getSingleFluxVectorOutputFile(java.lang.String fileName, FileFormat fileFormat, java.util.Set<java.lang.String> rxnNameHeaders, Fluxome fluxome)
          Returns an empty output file that is suitable for storing a single flux vector.