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java.lang.Objectsbrt.shell.proc.fba.BiggSbmlTranslater
public class BiggSbmlTranslater
This class is used to translate SBML files from the BiGG Database into the Systems Biology Research Tool's FBA Reaction Files and FBA Catalyst Files.
Constructor Summary | |
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BiggSbmlTranslater()
Constructs a new SBML translater. |
Method Summary | |
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void |
translate(java.lang.String sbmlFileName,
java.lang.String rxnFileName,
java.lang.String geneFileName,
java.io.PrintWriter out)
Translates an SBML file into an FBA Reaction File and an FBA Catalyst File. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public BiggSbmlTranslater()
Method Detail |
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public void translate(java.lang.String sbmlFileName, java.lang.String rxnFileName, java.lang.String geneFileName, java.io.PrintWriter out)
sbmlFileName
- the name of the SBML file.rxnFileName
- the desired name of the FBA Reaction File.geneFileName
- the desired name of the FBA Catalyst File to which
genes will be written.out
- the print writer to which descriptive messages will be
written.
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