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Packages that use MapInputFile | |
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sbrt.shell.io | Provides classes and interfaces for reading and writing files. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
Uses of MapInputFile in sbrt.shell.io |
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Subinterfaces of MapInputFile in sbrt.shell.io | |
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interface |
MapTextInputFile<K,V>
This interface is used to represent text-based input files that contain maps. |
Classes in sbrt.shell.io that implement MapInputFile | |
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class |
AbstractMapInputFile<K,V>
This abstract class is a skeleton implemenation of text-based map input files. |
class |
ComiFile<K,V>
This class is used to read column-oriented map input files. |
class |
ProcessInputFile
This class is used to represent process input files. |
class |
RomiFile<K,V>
This class is used to read row-oriented map input files. |
class |
SerializedMapInputFile<K,V>
This class is used to read input files containing serialized maps. |
Uses of MapInputFile in sbrt.shell.io.fba |
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Classes in sbrt.shell.io.fba that implement MapInputFile | |
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class |
FluxCapInputFile
This class is used to read files containing flux caps. |
Uses of MapInputFile in sbrt.shell.mng.fba |
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Methods in sbrt.shell.mng.fba that return MapInputFile | |
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static MapInputFile<java.lang.String,Interval> |
FluxPlasticityManager.getFluxIntervalFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns the flux interval input with the name denoted by FluxPlasticityManager.FLUX_INTERVAL_FILE in the provided manager input. |
static MapInputFile<java.lang.String,Interval> |
FluxPlasticityManager.getFluxIntervalFile(java.lang.String fileName,
Fluxome fluxome)
Returns the flux interval input file with the provided name. |
static MapInputFile<java.lang.String,java.lang.Double> |
FluxActivityManager.getFluxVectorFile(ManagerInput<java.lang.String,java.lang.String> input,
java.io.PrintWriter out,
Fluxome fluxome)
Returns the flux vector input file specified by the provided input. |
static MapInputFile<java.lang.String,java.lang.Double> |
FluxActivityManager.getFluxVectorFile(java.lang.String fileName,
FileFormat format,
Fluxome fluxome)
Returns the flux vector input file with the provided name. |
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