Uses of Class
sbrt.kernel.fba.RevRxn

Packages that use RevRxn
sbrt.kernel.fba Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.shell.text.chem Provides classes and interfaces for defining formats for chemistry related objects. 
sbrt.shell.text.fba Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. 
 

Uses of RevRxn in sbrt.kernel.fba
 

Methods in sbrt.kernel.fba that return types with arguments of type RevRxn
static
<T extends java.lang.Comparable<? super T>>
java.util.Map<T,RevRxn>
RxnComparer.getEquivRevRxns(T rxnId, java.util.Map<T,RevRxn> rxns)
          Returns the reactions in the provided map that are stoichiometrically equivalent to the reaction in the map with the provided map key.
 

Methods in sbrt.kernel.fba with parameters of type RevRxn
static boolean RxnComparer.equivRevRxns(RevRxn rxn1, RevRxn rxn2)
          Indicates if the provided reversible reactions are stoichiometrically equivalent.
 

Method parameters in sbrt.kernel.fba with type arguments of type RevRxn
static
<T extends java.lang.Comparable<? super T>>
java.util.Collection<java.util.Set<T>>
RxnComparer.getEquivRevRxnIds(java.util.Map<T,RevRxn> rxns)
          Returns a collection of sets of the names of stoichiometrically equivalent reactions contained in the provided map.
static
<T extends java.lang.Comparable<? super T>>
java.util.Set<T>
RxnComparer.getEquivRevRxnIds(T rxnId, java.util.Map<T,RevRxn> rxns)
          Returns the keys in the provided map that correspond to reactions that are stoichiometrically equivalent to the reaction in the map with the specified map key.
static
<T extends java.lang.Comparable<? super T>>
java.util.Map<T,RevRxn>
RxnComparer.getEquivRevRxns(T rxnId, java.util.Map<T,RevRxn> rxns)
          Returns the reactions in the provided map that are stoichiometrically equivalent to the reaction in the map with the provided map key.
 

Uses of RevRxn in sbrt.kernel.fba.proc
 

Methods in sbrt.kernel.fba.proc with parameters of type RevRxn
 java.util.Map<java.lang.String,IrrevRxn> RevRxnBreakerProcess.breakRxn(java.lang.String rxnId, RevRxn rxn)
          Breaks a reversible reaction into a pair of irreversible reactions.
 

Uses of RevRxn in sbrt.shell.text.chem
 

Methods in sbrt.shell.text.chem that return RevRxn
 RevRxn RevRxnFormatV1.parse(java.lang.String reaction)
          Parses the provided string and returns its corresponding chemical reaction.
 

Methods in sbrt.shell.text.chem with parameters of type RevRxn
 java.lang.String RevRxnFormatV1.format(RevRxn rxn)
          Returns a formatted string representation of the provided reversible chemical reaction.
 

Uses of RevRxn in sbrt.shell.text.fba
 

Methods in sbrt.shell.text.fba with parameters of type RevRxn
 java.lang.String RevRxnFormatV1.format(RevRxn rxn)
          Returns a formatted string representation of the provided irreversible chemical reaction.
 java.lang.String RxnFormatV1.format(RevRxn rxn)
          Returns a formatted string representation of the provided reversible reaction.
 java.lang.String RevRxnFormatV2.format(RevRxn rxn)
          Returns a formatted string representation of the provided irreversible chemical reaction.