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Description
Packages | |
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plug_in_example.kernel | |
plug_in_example.shell | |
sbrt | Provides the class used to run the Systems Biology Research Tool. |
sbrt.ext | Provides classes that allow the Systems Biology Research Tool to encapsulate external software. |
sbrt.ext.cplex | Provides a class that allows communication with CPLEX. |
sbrt.ext.glpk | Provides a class that allows communication with GLPK. |
sbrt.ext.mma | Provides classes that allow communication with Mathematica. |
sbrt.ext.mma.algebra | Provides classes that allow communication with Mathematica for the purposes of algebra. |
sbrt.ext.R | Provides classes that allow communication with R. |
sbrt.ext.R.stat | Provides classes that allow communication with R for the purposes of statistics. |
sbrt.kernel | Provides interfaces to define processes. |
sbrt.kernel.fba | Provides classes and interfaces for creating objects relevant to Flux Balance Analysis. |
sbrt.kernel.fba.analysis | Provides classes and interfaces for analyzing Flux Balance Analysis data. |
sbrt.kernel.fba.comp | Provides classes and interfaces for performing Flux Balance Analysis computations. |
sbrt.kernel.fba.proc | Provides classes and interfaces for executing Flux Balance Analysis processes. |
sbrt.kernel.io | Provides classes and interfaces used to perform kernel-level I/O. |
sbrt.kernel.math | Provides classes and interfaces for creating objects relevant to mathematics. |
sbrt.kernel.math.algebra | Provides classes and interfaces for creating objects relevant to algebra. |
sbrt.kernel.math.algebra.proc | Provides classes and interfaces for executing algebra-related processes. |
sbrt.kernel.math.comb.comp | Provides classes and interfaces for performing combinatorial analysis-related computations. |
sbrt.kernel.math.comb.proc | Provides classes and interfaces for performing combinatorial analysis-related processes. |
sbrt.kernel.math.geom | Provides classes and interfaces for creating objects relevant to computational geometry. |
sbrt.kernel.math.geom.comp | Provides classes and interfaces for performing geometry-related computations. |
sbrt.kernel.math.geom.proc | Provides classes and interfaces for performing geometry-related processes. |
sbrt.kernel.math.graph_theory | Provides classes and interfaces for creating objects relevant to graph theory. |
sbrt.kernel.math.graph_theory.comp | Provides classes and interfaces for performing graph theoretical computations. |
sbrt.kernel.math.graph_theory.proc | Provides classes and interfaces for performing graph theoretical processes. |
sbrt.kernel.math.optimization | Provides classes and interfaces for creating objects relevant to solving optimization problems. |
sbrt.kernel.math.stat | Provides classes and interfaces for creating objects relevant to statistics. |
sbrt.kernel.math.stat.comp | Provides classes and interfaces for performing statistical computations. |
sbrt.kernel.math.stat.proc | Provides classes and interfaces for performing statistical processes. |
sbrt.kernel.utilities | Provides classes and interfaces for performing utility functions. |
sbrt.kernel.utilities.proc | Provides classes and interfaces for performing utility processes. |
sbrt.shell | Provides classes used by shell-level software. |
sbrt.shell.gui | Provides classes for creating graphical user interfaces for the SBRT. |
sbrt.shell.io | Provides classes and interfaces for reading and writing files. |
sbrt.shell.io.fba | Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. |
sbrt.shell.mng | Provides classes and interfaces for creating process managers. |
sbrt.shell.mng.algebra | Provides classes for creating algebra process managers. |
sbrt.shell.mng.comb | Provides classes for creating combinatorics process managers. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
sbrt.shell.mng.geom | Provides classes and for creating geometry process managers. |
sbrt.shell.mng.graph_theory | Provides classes and for creating graph theoretical process managers. |
sbrt.shell.mng.stat | Provides classes and interfaces for creating statistical process managers. |
sbrt.shell.mng.utilities | Provides classes and interfaces for creating mathematical process managers. |
sbrt.shell.proc.fba | Provides classes for converting FBA-related files of different formats. |
sbrt.shell.text | Provides classes and interfaces for defining formats for basic objects. |
sbrt.shell.text.chem | Provides classes and interfaces for defining formats for chemistry related objects. |
sbrt.shell.text.fba | Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. |
sbrt.shell.text.math | Provides classes and interfaces for defining formats for mathematical objects. |
This document is the API specification for the Systems Biology Research Tool.
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