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Packages that use AbstractProcessManager | |
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plug_in_example.shell | |
sbrt.shell.mng.algebra | Provides classes for creating algebra process managers. |
sbrt.shell.mng.comb | Provides classes for creating combinatorics process managers. |
sbrt.shell.mng.fba | Provides classes and interfaces for creating Flux Balance Analysis process managers. |
sbrt.shell.mng.geom | Provides classes and for creating geometry process managers. |
sbrt.shell.mng.graph_theory | Provides classes and for creating graph theoretical process managers. |
sbrt.shell.mng.stat | Provides classes and interfaces for creating statistical process managers. |
sbrt.shell.mng.utilities | Provides classes and interfaces for creating mathematical process managers. |
Uses of AbstractProcessManager in plug_in_example.shell |
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Subclasses of AbstractProcessManager in plug_in_example.shell | |
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class |
GreetingManager
This class is used to manage greeting processes. |
Uses of AbstractProcessManager in sbrt.shell.mng.algebra |
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Subclasses of AbstractProcessManager in sbrt.shell.mng.algebra | |
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class |
LinearCombConverterManager
This class is used to convert linear combinations to matrices. |
class |
LinearSolverManager
This class is used to manage linear system solvers. |
class |
MatrixConverterManager
This class is used to convert matrices to linear combinations. |
class |
MultipleVectorsConverterManager
This class is used to convert files containing multiple vectors into a series of files, each containing a single vector. |
class |
SingleVectorConverterManager
This class is used to convert multiple files containing single vectors into a single file containing multiple vectors. |
Uses of AbstractProcessManager in sbrt.shell.mng.comb |
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Subclasses of AbstractProcessManager in sbrt.shell.mng.comb | |
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class |
SingleElementUnionManager
This class is used to manage single-element union computers. |
class |
StrictSingleElementUnionManager
This class is used to manage single-element union computers. |
Uses of AbstractProcessManager in sbrt.shell.mng.fba |
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Subclasses of AbstractProcessManager in sbrt.shell.mng.fba | |
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class |
BiggSbmlReaderManager
This class is used to manage the reading of SBML files obtained from the BiGG Database. |
class |
CatalystDeletionManager
This class is used to manage FBA catalyst deletion processes. |
class |
CdHarFluxVectorManager
This class is used to manage FBA coordinate direction hit-and-run random flux vector processes. |
class |
CvCatalystDeletionManager
This class is used to manage FBA constraint variation-catalyst deletion processes. |
class |
CvFbaOptManager
This class is used to manage constraint variation-FBA optimization processes. |
class |
CvMsFluxIntervalManager
This class is used to manage constraint variation-Mahadevan-Schilling flux interval processes. |
class |
CvObjectiveFunctionManager
This class is used to manage FBA constraint variation-objective function processes. |
class |
CvRevRxnFluxIntervalManager
This class is used to manage constraint variation-constrained reverse reaction flux interval processes. |
class |
CvRxnDeletionManager
This class is used to manage FBA constraint variation-reaction deletion processes. |
class |
CvSimpleFluxIntervalManager
This class is used to manage constraint variation-simple flux interval processes. |
class |
ExtremeCurrentManager
This class is used to manage FBA extreme current processes. |
class |
FbaManager
This abstract class provides a foundation for Flux Balance Analysis process managers. |
class |
FbaOptManager
This class is used to manage basic FBA optimization processes. |
class |
FbaSolverManager
This class is used to manage FBA solver processes. |
class |
FluxActivityManager
This class is used to manage flux activity processes. |
class |
FluxCapManager
This class is used to manage flux cap processes. |
class |
FluxPlasticityManager
This class is used to manage flux plasticity processes. |
class |
InitialPointManager
This class is used to manage initial point processes. |
class |
IntervalVariationManager
This abstract class provides utitlity functions for managing flux interval variation processes. |
class |
MetatoolInputReaderManager
This class is used to manage the conversion of input files for Metatool into SBRT FBA Reaction Files. |
class |
MetatoolInputWriterManager
This class is used to manage the writing of input files for Metatool. |
class |
MetatoolOutputReaderManager
This class is used to manage the writing of input files for Metatool. |
class |
MsFluxIntervalManager
This class is used to manage Mahadevan-Schilling flux interval processes. |
class |
MsFluxomeReducerManager
This class is used to manage the MS fluxome reduction algorithm. |
class |
NetworkInfoManager
This class is used to manage fluxome information processes. |
class |
ObjectiveFunctionManager
This class is used to manage objective function processes. |
class |
PalssonSbmlReaderManager
This class is used to manage the reading of SBML files obtained from Palsson's website. |
class |
RandomConstraintsManager
This class is used to manage random constraints generators. |
class |
RandomFluxVectorManager
This abstract class provides a foundation for random flux vector managers. |
class |
RandomObjectiveManager
This class is used to manage random objective function generators. |
class |
RedundRxnRemoverManager
This class is used to manage redundant reaction remover processes. |
class |
ReverseRxnFluxIntervalManager
This class is used to manage constrained-reverse reaction flux interval processes. |
class |
RevRxnBreakerManager
This class is used to manage reversible reaction breakers. |
class |
RxnDeletionManager
This class is used to manage FBA reaction deletion processes. |
class |
SimpleFluxIntervalManager
This class is used to manage simple flux interval processes. |
class |
SimpleRxnFileTransManager
This class is used to manage the translation of simple reaction files into Systems Biology Research Tool (SBRT) FBA Reaction Files. |
class |
SlpCycleIdManager
This class is used to manage steady state cycle identification. |
class |
WwFluxomeReducerManager
This class is used to manage the WW fluxome reduction algorithm. |
Uses of AbstractProcessManager in sbrt.shell.mng.geom |
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Subclasses of AbstractProcessManager in sbrt.shell.mng.geom | |
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class |
CdHarManager
This class is used to manage coordinate direction hit-and-run algorithms. |
Uses of AbstractProcessManager in sbrt.shell.mng.graph_theory |
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Subclasses of AbstractProcessManager in sbrt.shell.mng.graph_theory | |
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class |
CycleIdManager
This class is used to manage simple cycle identification processes. |
class |
GraphInfoManager
This class is used to manage a graph information gatherer. |
class |
PathIdManager
This class is used to manage simple path identification processes. |
class |
UniqueCycleIdManager
This class is used to identify the unique cycles in files that contain collections of cycles. |
Uses of AbstractProcessManager in sbrt.shell.mng.stat |
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Subclasses of AbstractProcessManager in sbrt.shell.mng.stat | |
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class |
CorrelationManager
This class is used to manage correlation processes. |
class |
KendallTauManager
This class is used to manage correlation process whose correlation computers are of type KendallTau. |
class |
MannWhitneyUManager
This class is used to manage Mann-Whitney tests. |
Uses of AbstractProcessManager in sbrt.shell.mng.utilities |
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Subclasses of AbstractProcessManager in sbrt.shell.mng.utilities | |
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class |
IntervalComparisonManager
This class is used to compare the intervals contained in separate files. |
class |
VariableParticipationManager
This class is used to manage variable participation processes. |
class |
VectorComparisonManager
This class is used to compare the intervals contained in separate files. |
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