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Description
Class Summary | |
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AbstractCvFbaOptProcess<F extends Fluxome,R> | This class is used to represent constraint-variation Flux Balance Analysis processes. |
CatalystDeletionProcess<F extends CatalyzedFluxome> | This class is used to perform catalyst deletion processes. |
CdHarFluxVectorProcess<F extends Fluxome> | This class is used to perform coordinate direction hit-and-run flux vector processes. |
CvCatalystDeletionProcess<F extends CatalyzedFluxome> | This class is used to perform constraint-variation catalyst deletion processes. |
CvFbaOptProcess<F extends Fluxome> | This class is used to perform constraint-variation FBA optimization processes. |
CvFluxIntervalProcess<F extends Fluxome> | This class is used to perform constraint variation flux interval processes. |
CvObjectiveFunctionProcess<F extends Fluxome> | This class is used to perform constraint-variation objective function processes. |
CvRxnDeletionProcess<F extends Fluxome> | This class is used to perform constraint-variation reaction deletion processes. |
CycleIdProcess<F extends Fluxome> | This class is used to execute steady state cycle identification processes. |
ExtremeCurrentProcess<F extends IrrevRxnFluxome> | This class is used to identify the extreme currents in stoichiometric networks. |
FbaOptProcess<F extends Fluxome> | This class is used to perform a basic Flux Balance Analysis optimization. |
FbaProcess<F extends Fluxome,R> | This abstract class is used to represent Flux Balance Analysis processes. |
FbaSolverProcess<F extends Fluxome> | This class is used to solve the equation Sv = 0. |
FluxActivityProcess<F extends Fluxome> | This class is used to analyze the activity of fluxes. |
FluxActivityProcess.Results | This class is used to represent the results of a flux activity process. |
FluxCapProcess | This class is used to perform a flux cap identification. |
FluxIntervalProcess<F extends Fluxome> | This class is used to perform flux interval computations. |
FluxomeReducerProcess<T extends Fluxome> | This class is used to execute fluxome reduction processes. |
FluxPlasticityProcess<F extends Fluxome> | This class is used to analyze the plasticity of fluxes. |
FluxPlasticityProcess.Results | This class is used to represent the results of a flux plasticity process. |
InitialPointGenerator<F extends Fluxome> | This class is used to execute initial point generators. |
NetworkInfoProcess<F extends CatalyzedFluxome> | This class is used to gather basic information about a fluxome. |
NetworkInfoProcess.Results<F extends CatalyzedFluxome> | This class is used to represent the information gathered about a fluxome. |
ObjFunAnalysis<F extends Fluxome> | This class is used to perform objective function analyses. |
RandConstGeneratorV1<F extends Fluxome> | This class is used to generate random flux constraints. |
RandomObjectiveGenerator<F extends Fluxome> | This class is used to generate random objective functions. |
RedundRxnRemoverProcess | This class is used to remove redundant reactions from a fluxome. |
RevRxnBreakerProcess | This class is used to break reversible reactions into pairs of irreversible reactions. |
RxnDeletionProcess<F extends Fluxome> | This class is used to perform reaction deletion processes. |
SvCdHarFluxVectorProcess<F extends Fluxome> | This class is used to perform space variation coordinate direction hit-and-run flux vector processes. |
SvInitialPointProcess<F extends Fluxome> | This class is used to perform flux space variation initial point processes. |
Provides classes and interfaces for executing Flux Balance Analysis processes.
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