Uses of Package
sbrt.kernel.fba.comp

Packages that use sbrt.kernel.fba.comp
sbrt.kernel.fba.comp Provides classes and interfaces for performing Flux Balance Analysis computations. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Classes in sbrt.kernel.fba.comp used by sbrt.kernel.fba.comp
AbstractCvComputer
          This abstract class is a skeleton implementation of FluxCvComputer.
AbstractFluxIntervalComputer
          This abstract class is a skeleton implemenation of FluxIntervalComputer.
CdHarFluxComp.Results
          This class is used to represent the results of a coordinate-direction hit-and-run flux vector computation.
CycleComputer
          This interface is used to represent algorithms for identifying steady state cycles in stoichiometric networks.
ExtremeCurrentComputer
          This interface is used to represent extreme current computers.
FbaOptimizer
          This class is the workhorse of all Flux Balance Analysis optimizations.
FbaOptimizer.Results
          This class is used to store the results of an FBA optimization problem.
FluxCvComputer
          This interface is used to represent a flux constraint variation computer.
FluxIntervalComputer
          This interface is used to represent flux interval computers.
FluxomeReducer
          This interface is used to represent algorithms that reduce the size of fluxomes.
InitialPointComputer.Results
          This class is used to represent the results of the initial point computation.
 

Classes in sbrt.kernel.fba.comp used by sbrt.kernel.fba.proc
CdHarFluxComp
          This class is used to compute randomly distributed vectors within flux space.
CdHarFluxComp.Results
          This class is used to represent the results of a coordinate-direction hit-and-run flux vector computation.
CycleComputer
          This interface is used to represent algorithms for identifying steady state cycles in stoichiometric networks.
ExtremeCurrentComputer
          This interface is used to represent extreme current computers.
FbaOptimizer
          This class is the workhorse of all Flux Balance Analysis optimizations.
FbaOptimizer.Results
          This class is used to store the results of an FBA optimization problem.
FluxCapComputer
          This class is used to compute flux caps for use in Mahadevan-Schilling flux interval computations.
FluxCvComputer
          This interface is used to represent a flux constraint variation computer.
FluxIntervalComputer
          This interface is used to represent flux interval computers.
FluxomeReducer
          This interface is used to represent algorithms that reduce the size of fluxomes.
InitialPointComputer
          This class is used to compute initial points for coordinate-direction hit-and-run random flux vector algorithms.
InitialPointComputer.Results
          This class is used to represent the results of the initial point computation.
RxnDeletionComputer
          This class is used to compute the effect of deleting reactions in a fluxome.
 

Classes in sbrt.kernel.fba.comp used by sbrt.shell.io.fba
FbaOptimizer.Results
          This class is used to store the results of an FBA optimization problem.
 

Classes in sbrt.kernel.fba.comp used by sbrt.shell.mng.fba
CdHarFluxComp
          This class is used to compute randomly distributed vectors within flux space.
ExtremeCurrentComputer
          This interface is used to represent extreme current computers.
FbaOptException
          This class is used to indicate that an optimal solution could not be found or does not exist.
FbaOptimizer
          This class is the workhorse of all Flux Balance Analysis optimizations.
FbaOptimizer.Results
          This class is used to store the results of an FBA optimization problem.
FluxRangeException
          This class is used to indicate that the range of a flux interval has exceeded a defined cutoff value.
InvalidFluxVectorException
          This class is used to indicate that a flux vector is invalid.
MsFluxIntervalComputer
          This class is used to compute Mahadevan-Schilling flux intervals.
ReverseRxnIntervalComp
          This class is used to compute flux intervals while constraining the fluxes of reverse reactions to their minimum.
RxnDeletionComputer
          This class is used to compute the effect of deleting reactions in a fluxome.
SimpleFluxIntervalComputer
          This class is used to compute flux intervals in the simplest possible way.