Uses of Class
sbrt.kernel.fba.comp.FbaOptComputer.Results

Packages that use FbaOptComputer.Results
sbrt.kernel.fba.comp Provides classes and interfaces for performing Flux Balance Analysis computations. 
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
 

Uses of FbaOptComputer.Results in sbrt.kernel.fba.comp
 

Methods in sbrt.kernel.fba.comp that return FbaOptComputer.Results
 FbaOptComputer.Results RxnDeletionComputer.delete(java.util.Set<java.lang.String> rxnNames)
          Computes and returns the results of deleting the reactions whose names appear in the provided set.
 FbaOptComputer.Results FbaOptComputer.getMax(MathExpr<?> objective)
          Returns the results of computing the maximum value of the provided objective function.
 FbaOptComputer.Results FbaOptComputer.getMin(MathExpr<?> objective)
          Returns the results of computing the minimum value of the provided objective function.
 FbaOptComputer.Results FbaOptComputer.getOptimal(MathExpr<?> objective, OptimizationSense sense)
          Returns the results of computing the optimal value of the provided objective function.
 FbaOptComputer.Results FbaOptComputer.getOptimal(java.lang.String reactionName, OptimizationSense sense)
          Returns the results of computing the optimal flux of the reaction with the provided name.
 

Uses of FbaOptComputer.Results in sbrt.kernel.fba.proc
 

Method parameters in sbrt.kernel.fba.proc with type arguments of type FbaOptComputer.Results
 void CvFbaOptimizationExperiment.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void ObjectiveFunctionAnalysis.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void CatalystDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void RxnDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void CvRxnDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void StoichVariationProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void CvObjectiveFunctionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 void FbaOptimizationProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Computes the optimal value of the current objective function and adds the results to the provided results manager via its ResultsManager.addData(Object) method.
 void CvCatalystDeletionProcess.run(ResultsManager<FbaOptComputer.Results> resultsManager)
          Runs this process and adds the generated results to the provided results manager via its ResultsManager.addData(Object) method.
 

Uses of FbaOptComputer.Results in sbrt.shell.io.fba
 

Methods in sbrt.shell.io.fba with type parameters of type FbaOptComputer.Results
<S extends FbaOptComputer.Results>
void
ColumnOrFbaOptOutputFile.addData(S results)
          Writes the appropriate values in the provided FbaOptimizationComputer.Results to this file.
<S extends FbaOptComputer.Results>
void
SerFbaOptOutputFile.addData(S results)
          Writes the appropriate values in the provided FbaOptimizationComputer.Results to this file.
<S extends FbaOptComputer.Results>
void
RowOrFbaOptOutputFile.addData(S results)
          Writes the appropriate values in the provided FbaOptimizationComputer.Results to this file.
 

Uses of FbaOptComputer.Results in sbrt.shell.mng.fba
 

Methods in sbrt.shell.mng.fba that return types with arguments of type FbaOptComputer.Results
static MultiOutputFiles<ColumnOrFbaOptOutputFile,FbaOptComputer.Results> FbaOptManager.getMultiColOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, Fluxome fluxome)
          Please consult the source code for a complete description of this method's actions.
static MultiOutputFiles<? extends FbaOptOutputFile,FbaOptComputer.Results> FbaOptManager.getMultiFileOutput(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, Fluxome fluxome)
          Please consult the source code for a complete description of this method's actions.
static MultiOutputFiles<RowOrFbaOptOutputFile,FbaOptComputer.Results> FbaOptManager.getMultiRowOrOutputFiles(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, Fluxome fluxome)
          Please consult the source code for a complete description of this method's actions.
static MultiOutputFiles<SerFbaOptOutputFile,FbaOptComputer.Results> FbaOptManager.getMultiSerOutputFiles(ManagerInput<java.lang.String,java.lang.String> input, java.io.PrintWriter out, java.util.Iterator<java.lang.String> fileNameSource, java.lang.String fileNameSourceName, Fluxome fluxome)
          Please consult the source code for a complete description of this method's actions.