Uses of Class
sbrt.shell.mng.AbstractProcessManager

Packages that use AbstractProcessManager
plug_in_example.shell   
sbrt.shell.mng.algebra Provides classes for creating algebra process managers. 
sbrt.shell.mng.comb Provides classes for creating combinatorics process managers. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.mng.geom Provides classes and for creating geometry process managers. 
sbrt.shell.mng.graph_theory Provides classes and for creating graph theoretical process managers. 
sbrt.shell.mng.stat Provides classes and interfaces for creating statistical process managers. 
sbrt.shell.mng.utilities Provides classes and interfaces for creating mathematical process managers. 
 

Uses of AbstractProcessManager in plug_in_example.shell
 

Subclasses of AbstractProcessManager in plug_in_example.shell
 class GreetingManager
          This class is used to manage greeting processes.
 

Uses of AbstractProcessManager in sbrt.shell.mng.algebra
 

Subclasses of AbstractProcessManager in sbrt.shell.mng.algebra
 class LinearCombConverterManager
          This class is used to convert linear combinations to matrices.
 class LinearSolverManager
          This class is used to manage linear system solvers.
 class MatrixConverterManager
          This class is used to convert matrices to linear combinations.
 class MultipleVectorsConverterManager
          This class is used to convert files containing multiple vectors into a series of files, each containing a single vector.
 class SingleVectorConverterManager
          This class is used to convert multiple files containing single vectors into a single file containing multiple vectors.
 

Uses of AbstractProcessManager in sbrt.shell.mng.comb
 

Subclasses of AbstractProcessManager in sbrt.shell.mng.comb
 class SingleElementUnionManager
          This class is used to manage single-element union computers.
 class StrictSingleElementUnionManager
          This class is used to manage single-element union computers.
 

Uses of AbstractProcessManager in sbrt.shell.mng.fba
 

Subclasses of AbstractProcessManager in sbrt.shell.mng.fba
 class BiggSbmlReaderManager
          This class is used to manage the reading of SBML files obtained from the BiGG Database.
 class CatalystDeletionManager
          This class is used to manage FBA catalyst deletion processes.
 class CdHarFluxVectorManager
          This class is used to manage FBA coordinate direction hit-and-run random flux vector processes.
 class CvCatalystDeletionManager
          This class is used to manage FBA constraint variation-catalyst deletion processes.
 class CvFbaOptManager
          This class is used to manage constraint variation-FBA optimization processes.
 class CvMsFluxIntervalManager
          This class is used to manage constraint variation-Mahadevan-Schilling flux interval processes.
 class CvObjectiveFunctionManager
          This class is used to manage FBA constraint variation-objective function processes.
 class CvRevRxnFluxIntervalManager
          This class is used to manage constraint variation-constrained reverse reaction flux interval processes.
 class CvRxnDeletionManager
          This class is used to manage FBA constraint variation-reaction deletion processes.
 class CvSimpleFluxIntervalManager
          This class is used to manage constraint variation-simple flux interval processes.
 class ExtremeCurrentManager
          This class is used to manage FBA extreme current processes.
 class FbaManager
          This abstract class provides a foundation for Flux Balance Analysis process managers.
 class FbaOptManager
          This class is used to manage basic FBA optimization processes.
 class FbaSolverManager
          This class is used to manage FBA solver processes.
 class FluxActivityManager
          This class is used to manage flux activity processes.
 class FluxCapManager
          This class is used to manage flux cap processes.
 class FluxPlasticityManager
          This class is used to manage flux plasticity processes.
 class InitialPointManager
          This class is used to manage initial point processes.
 class IntervalVariationManager
          This abstract class provides utitlity functions for managing flux interval variation processes.
 class MetatoolInputReaderManager
          This class is used to manage the conversion of input files for Metatool into SBRT FBA Reaction Files.
 class MetatoolInputWriterManager
          This class is used to manage the writing of input files for Metatool.
 class MetatoolOutputReaderManager
          This class is used to manage the writing of input files for Metatool.
 class MsFluxIntervalManager
          This class is used to manage Mahadevan-Schilling flux interval processes.
 class MsFluxomeReducerManager
          This class is used to manage the MS fluxome reduction algorithm.
 class NetworkInfoManager
          This class is used to manage fluxome information processes.
 class ObjectiveFunctionManager
          This class is used to manage objective function processes.
 class PalssonSbmlReaderManager
          This class is used to manage the reading of SBML files obtained from Palsson's website.
 class RandomConstraintsManager
          This class is used to manage random constraints generators.
 class RandomFluxVectorManager
          This abstract class provides a foundation for random flux vector managers.
 class RandomObjectiveManager
          This class is used to manage random objective function generators.
 class RedundRxnRemoverManager
          This class is used to manage redundant reaction remover processes.
 class ReverseRxnFluxIntervalManager
          This class is used to manage constrained-reverse reaction flux interval processes.
 class RevRxnBreakerManager
          This class is used to manage reversible reaction breakers.
 class RxnDeletionManager
          This class is used to manage FBA reaction deletion processes.
 class SimpleFluxIntervalManager
          This class is used to manage simple flux interval processes.
 class SimpleRxnFileTransManager
          This class is used to manage the translation of simple reaction files into Systems Biology Research Tool (SBRT) FBA Reaction Files.
 class SlpCycleIdManager
          This class is used to manage steady state cycle identification.
 class WwFluxomeReducerManager
          This class is used to manage the WW fluxome reduction algorithm.
 

Uses of AbstractProcessManager in sbrt.shell.mng.geom
 

Subclasses of AbstractProcessManager in sbrt.shell.mng.geom
 class CdHarManager
          This class is used to manage coordinate direction hit-and-run algorithms.
 

Uses of AbstractProcessManager in sbrt.shell.mng.graph_theory
 

Subclasses of AbstractProcessManager in sbrt.shell.mng.graph_theory
 class CycleIdManager
          This class is used to manage simple cycle identification processes.
 class GraphInfoManager
          This class is used to manage a graph information gatherer.
 class PathIdManager
          This class is used to manage simple path identification processes.
 class UniqueCycleIdManager
          This class is used to identify the unique cycles in files that contain collections of cycles.
 

Uses of AbstractProcessManager in sbrt.shell.mng.stat
 

Subclasses of AbstractProcessManager in sbrt.shell.mng.stat
 class CorrelationManager
          This class is used to manage correlation processes.
 class KendallTauManager
          This class is used to manage correlation process whose correlation computers are of type KendallTau.
 class MannWhitneyUManager
          This class is used to manage Mann-Whitney tests.
 

Uses of AbstractProcessManager in sbrt.shell.mng.utilities
 

Subclasses of AbstractProcessManager in sbrt.shell.mng.utilities
 class IntervalComparisonManager
          This class is used to compare the intervals contained in separate files.
 class VariableParticipationManager
          This class is used to manage variable participation processes.
 class VectorComparisonManager
          This class is used to compare the intervals contained in separate files.