Uses of Interface
sbrt.shell.mng.ShellProcessManager

Packages that use ShellProcessManager
sbrt.shell.mng.algebra Provides classes for creating algebra process managers. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.mng.graph_theory Provides classes and for creating graph theoretical process managers. 
 

Uses of ShellProcessManager in sbrt.shell.mng.algebra
 

Classes in sbrt.shell.mng.algebra that implement ShellProcessManager
 class LinearCombConverterManager
          This class is used to convert linear combinations to matrices.
 class MatrixConverterManager
          This class is used to convert matrices to linear combinations.
 class MultipleVectorsConverterManager
          This class is used to convert files containing multiple vectors into a series of files, each containing a single vector.
 class SingleVectorConverterManager
          This class is used to convert multiple files containing single vectors into a single file containing multiple vectors.
 

Uses of ShellProcessManager in sbrt.shell.mng.fba
 

Classes in sbrt.shell.mng.fba that implement ShellProcessManager
 class BiggSbmlReaderManager
          This class is used to manage the reading of SBML files obtained from the BiGG Database.
 class MetatoolInputReaderManager
          This class is used to manage the conversion of input files for Metatool into SBRT FBA Reaction Files.
 class MetatoolInputWriterManager
          This class is used to manage the writing of input files for Metatool.
 class MetatoolOutputReaderManager
          This class is used to manage the writing of input files for Metatool.
 class PalssonSbmlReaderManager
          This class is used to manage the reading of SBML files obtained from Palsson's website.
 class SimpleRxnFileTransManager
          This class is used to manage the translation of simple reaction files into Systems Biology Research Tool (SBRT) FBA Reaction Files.
 

Uses of ShellProcessManager in sbrt.shell.mng.graph_theory
 

Classes in sbrt.shell.mng.graph_theory that implement ShellProcessManager
 class UniqueCycleIdManager
          This class is used to identify the unique cycles in files that contain collections of cycles.