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java.lang.Objectsbrt.shell.text.AbstractMapFormat<java.lang.String,java.util.Set<LinearComb<java.lang.String>>>
sbrt.shell.text.fba.FluxCapFormatV1
public class FluxCapFormatV1
This class is a concrete implementation of FluxCapFormat.
Constructor Summary | |
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FluxCapFormatV1(Fluxome fluxome)
Constructs a new flux cap file line format using the provided fluxome. |
Method Summary | |
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Fluxome |
getFluxome()
Returns the fluxome used to verify reaction names. |
PipeListFormat<java.util.Set<LinearComb<java.lang.String>>> |
getListFormat()
Returns the format used for lists of values. |
ColonMapEntryFormatV1<java.lang.String,java.lang.String> |
getMapEntryFormat()
Returns the format used for variable-value pairs. |
PipeSetFormat<java.lang.String> |
getSetFormat()
Returns the format used for sets of variables. |
Methods inherited from class sbrt.shell.text.AbstractMapFormat |
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formatKey, formatKeys, formatPair, formatPair, formatValue, formatValues, formatValues, getKeyFormatter, getKeyParser, getValueFormatter, getValueParser, parseAllKeys, parseAllPairs, parseAllValues, parseAllValues, parseKey, parsePair, parseValue |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface sbrt.shell.text.MapFormat |
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formatKey, formatKeys, formatPair, formatPair, formatValue, formatValues, formatValues, parseAllKeys, parseAllPairs, parseAllValues, parseAllValues, parseKey, parsePair, parseValue |
Constructor Detail |
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public FluxCapFormatV1(Fluxome fluxome)
fluxome
- the fluxome with which to verify reaction
names.
java.lang.NullPointerException
- if the provided argument
is null
.Method Detail |
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public Fluxome getFluxome()
getFluxome
in interface FluxCapFormat
public ColonMapEntryFormatV1<java.lang.String,java.lang.String> getMapEntryFormat()
getMapEntryFormat
in class AbstractMapFormat<java.lang.String,java.util.Set<LinearComb<java.lang.String>>>
public PipeSetFormat<java.lang.String> getSetFormat()
getSetFormat
in class AbstractMapFormat<java.lang.String,java.util.Set<LinearComb<java.lang.String>>>
public PipeListFormat<java.util.Set<LinearComb<java.lang.String>>> getListFormat()
getListFormat
in class AbstractMapFormat<java.lang.String,java.util.Set<LinearComb<java.lang.String>>>
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