Uses of Class
sbrt.kernel.utilities.UnmodifiableSet

Packages that use UnmodifiableSet
plug_in_example.shell   
sbrt.kernel.fba.proc Provides classes and interfaces for executing Flux Balance Analysis processes. 
sbrt.kernel.math.algebra Provides classes and interfaces for creating objects relevant to algebra. 
sbrt.kernel.math.geom Provides classes and interfaces for creating objects relevant to computational geometry. 
sbrt.kernel.math.geom.comp Provides classes and interfaces for performing geometry-related computations. 
sbrt.kernel.utilities Provides classes and interfaces for performing utility functions. 
sbrt.shell.io Provides classes and interfaces for reading and writing files. 
sbrt.shell.io.fba Provides classes and interfaces for reading and writing files relevant to Flux Balance Analysis. 
sbrt.shell.mng Provides classes and interfaces for creating process managers. 
sbrt.shell.mng.algebra Provides classes for creating algebra process managers. 
sbrt.shell.mng.comb Provides classes for creating combinatorics process managers. 
sbrt.shell.mng.fba Provides classes and interfaces for creating Flux Balance Analysis process managers. 
sbrt.shell.mng.geom Provides classes and for creating geometry process managers. 
sbrt.shell.mng.graph_theory Provides classes and for creating graph theoretical process managers. 
sbrt.shell.mng.stat Provides classes and interfaces for creating statistical process managers. 
sbrt.shell.mng.utilities Provides classes and interfaces for creating mathematical process managers. 
 

Uses of UnmodifiableSet in plug_in_example.shell
 

Fields in plug_in_example.shell declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> GreetingManager.optionalKeywords
          The set of optional keywords in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> GreetingManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
 

Uses of UnmodifiableSet in sbrt.kernel.fba.proc
 

Methods in sbrt.kernel.fba.proc that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> FluxPlasticityProcess.Results.getAlwaysActive()
          Returns the set of fluxes that are always active.
 UnmodifiableSet<java.lang.String> FluxPlasticityProcess.Results.getNeverActive()
          Returns the set of fluxes that are never active.
 UnmodifiableSet<java.lang.String> FluxPlasticityProcess.Results.getPotActive()
          Returns the set of fluxes that are potentially active.
 

Uses of UnmodifiableSet in sbrt.kernel.math.algebra
 

Methods in sbrt.kernel.math.algebra that return UnmodifiableSet
 UnmodifiableSet<C> MatrixWrap.getColumnIndices()
          Returns the set of column indices contained in this matrix.
 UnmodifiableSet<R> MatrixWrap.getRowIndices()
          Returns the set of row indices contained in this matrix.
 

Uses of UnmodifiableSet in sbrt.kernel.math.geom
 

Methods in sbrt.kernel.math.geom that return UnmodifiableSet
 UnmodifiableSet<ParallelHyperplanes<V>> HashConvexPolytope.getBoundingPlanes()
          Returns the set of bounding hyperplanes that define this convex polytope.
 UnmodifiableSet<V> HashConvexPolytope.getVariables()
          Returns the variables contained in the hyperplanes defining the bounding half-spaces.
 

Uses of UnmodifiableSet in sbrt.kernel.math.geom.comp
 

Methods in sbrt.kernel.math.geom.comp that return UnmodifiableSet
 UnmodifiableSet<V> CdHarComp.Results.getUnchangedVariables()
          Returns the variables whose values are the same as they were in the previous point.
 

Uses of UnmodifiableSet in sbrt.kernel.utilities
 

Methods in sbrt.kernel.utilities that return UnmodifiableSet
 UnmodifiableSet<java.util.Map.Entry<K,V>> UnmodifiableMap.entrySet()
          See Map.entrySet().
 UnmodifiableSet<C> LogicalRelation.getConditions()
          Returns the set of conditions of this logical relationship.
 UnmodifiableSet<K> UnmodifiableMap.keySet()
          See Map.keySet().
 

Uses of UnmodifiableSet in sbrt.shell.io
 

Methods in sbrt.shell.io that return UnmodifiableSet
 UnmodifiableSet<K> AbstractMapOutputFile.getFilterKeys()
          Returns the set of keys whose values will be written to this output file when a map is added.
 UnmodifiableSet<K> RomiFile.getKeys()
          Returns the keys of the map contained in this file.
 UnmodifiableSet<K> AbstractMapInputFile.getRequiredKeys()
          Returns the set of keys that must be contained in this file.
 

Uses of UnmodifiableSet in sbrt.shell.io.fba
 

Methods in sbrt.shell.io.fba that return UnmodifiableSet
 UnmodifiableSet<E> RxnNamExprSetInputFile.getRxnNameExprSet()
          Returns the set of reaction name expressions contained in this fle.
 

Uses of UnmodifiableSet in sbrt.shell.mng
 

Fields in sbrt.shell.mng declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> AbstractProcessManager.optionalKeywords
          The set of optional keywords in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> AbstractProcessManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
 

Uses of UnmodifiableSet in sbrt.shell.mng.algebra
 

Fields in sbrt.shell.mng.algebra declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> LinearSolverManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> MultipleVectorsConverterManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> MatrixConverterManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> LinearCombConverterManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> SingleVectorConverterManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> LinearSolverManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> MultipleVectorsConverterManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> MatrixConverterManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> LinearCombConverterManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> SingleVectorConverterManager.requiredKeywords
          The set of keywords required by this process manager.
 

Methods in sbrt.shell.mng.algebra that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> LinearSolverManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> MultipleVectorsConverterManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> MatrixConverterManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> LinearCombConverterManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> SingleVectorConverterManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> LinearSolverManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> MultipleVectorsConverterManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> MatrixConverterManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> LinearCombConverterManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> SingleVectorConverterManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 

Uses of UnmodifiableSet in sbrt.shell.mng.comb
 

Fields in sbrt.shell.mng.comb declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> StrictSingleElementUnionManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> SingleElementUnionManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> StrictSingleElementUnionManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> SingleElementUnionManager.requiredKeywords
          The set of keywords required by this process manager.
 

Methods in sbrt.shell.mng.comb that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> StrictSingleElementUnionManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> SingleElementUnionManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> StrictSingleElementUnionManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> SingleElementUnionManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 

Uses of UnmodifiableSet in sbrt.shell.mng.fba
 

Fields in sbrt.shell.mng.fba declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> WwFluxomeReducerManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> RandomConstraintsManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> MetatoolInputWriterManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> CdHarFluxVectorManager.optionalKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> ExtremeCurrentManager.optionalKeywords
          The set of optional keywords in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CvFbaOptManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> NetworkInfoManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> FluxCapManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> ReverseRxnFluxIntervalManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> SimpleFluxIntervalManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> FbaOptManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> RxnDeletionManager.optionalKeywords
          The set of optional keywords in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CvRxnDeletionManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> ObjectiveFunctionManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> SlpCycleIdManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> SimpleRxnFileTransManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> RevRxnBreakerManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> FbaManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> MetatoolInputReaderManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> CvCatalystDeletionManager.optionalKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> MetatoolOutputReaderManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> MsFluxomeReducerManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> FbaSolverManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> BiggSbmlReaderManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> CvRevRxnFluxIntervalManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> FluxPlasticityManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> MsFluxIntervalManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> RandomObjectiveManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> CvMsFluxIntervalManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> CvSimpleFluxIntervalManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> CatalystDeletionManager.optionalKeywords
          The set of optional keywords in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> RedundRxnRemoverManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> InitialPointManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> PalssonSbmlReaderManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> CvObjectiveFunctionManager.optionalKeywords
          The set of optional keywords in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> FluxActivityManager.optionalKeywords
          The set of optional keywords in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> WwFluxomeReducerManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> RandomConstraintsManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> MetatoolInputWriterManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> CdHarFluxVectorManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> ExtremeCurrentManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CvFbaOptManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> NetworkInfoManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> FluxCapManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> ReverseRxnFluxIntervalManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> SimpleFluxIntervalManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> FbaOptManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> RxnDeletionManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CvRxnDeletionManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> ObjectiveFunctionManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> SlpCycleIdManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> SimpleRxnFileTransManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> RevRxnBreakerManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> FbaManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> MetatoolInputReaderManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> CvCatalystDeletionManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> MetatoolOutputReaderManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> MsFluxomeReducerManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> FbaSolverManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> BiggSbmlReaderManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> CvRevRxnFluxIntervalManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> FluxPlasticityManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> MsFluxIntervalManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> RandomObjectiveManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CvMsFluxIntervalManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CvSimpleFluxIntervalManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CatalystDeletionManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> RedundRxnRemoverManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> InitialPointManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> PalssonSbmlReaderManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> CvObjectiveFunctionManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> FluxActivityManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
 

Methods in sbrt.shell.mng.fba that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> WwFluxomeReducerManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> RandomConstraintsManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> MetatoolInputWriterManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> CdHarFluxVectorManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> ExtremeCurrentManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> CvFbaOptManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> NetworkInfoManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> FluxCapManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> ReverseRxnFluxIntervalManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> SimpleFluxIntervalManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> FbaOptManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> RxnDeletionManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> ObjectiveFunctionManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> SlpCycleIdManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> SimpleRxnFileTransManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> RevRxnBreakerManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> MetatoolInputReaderManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> CvCatalystDeletionManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> MetatoolOutputReaderManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> MsFluxomeReducerManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> FbaSolverManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> BiggSbmlReaderManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> CvRevRxnFluxIntervalManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> FluxPlasticityManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> MsFluxIntervalManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> RandomObjectiveManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> CvMsFluxIntervalManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> CvSimpleFluxIntervalManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> RedundRxnRemoverManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> InitialPointManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> PalssonSbmlReaderManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> FluxActivityManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> WwFluxomeReducerManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> RandomConstraintsManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> MetatoolInputWriterManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> CdHarFluxVectorManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> ExtremeCurrentManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> CvFbaOptManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> NetworkInfoManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> FluxCapManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> ReverseRxnFluxIntervalManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> SimpleFluxIntervalManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> FbaOptManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> RxnDeletionManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> ObjectiveFunctionManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> SlpCycleIdManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> SimpleRxnFileTransManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> RevRxnBreakerManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> MetatoolInputReaderManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> CvCatalystDeletionManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> MetatoolOutputReaderManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> MsFluxomeReducerManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> FbaSolverManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> BiggSbmlReaderManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> CvRevRxnFluxIntervalManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> FluxPlasticityManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> MsFluxIntervalManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> RandomObjectiveManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> CvMsFluxIntervalManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> CvSimpleFluxIntervalManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> RedundRxnRemoverManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> InitialPointManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> PalssonSbmlReaderManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> FluxActivityManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 

Uses of UnmodifiableSet in sbrt.shell.mng.geom
 

Fields in sbrt.shell.mng.geom declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> CdHarManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> CdHarManager.requiredKeywords
          The set of keywords required by this process manager.
 

Methods in sbrt.shell.mng.geom that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> CdHarManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> CdHarManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 

Uses of UnmodifiableSet in sbrt.shell.mng.graph_theory
 

Fields in sbrt.shell.mng.graph_theory declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> GraphInfoManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> CycleIdManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> UniqueCycleIdManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> PathIdManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> GraphInfoManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> CycleIdManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> UniqueCycleIdManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> PathIdManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
 

Methods in sbrt.shell.mng.graph_theory that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> GraphInfoManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> CycleIdManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> UniqueCycleIdManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> PathIdManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> GraphInfoManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> CycleIdManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> UniqueCycleIdManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> PathIdManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 

Uses of UnmodifiableSet in sbrt.shell.mng.stat
 

Fields in sbrt.shell.mng.stat declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> MannWhitneyUManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> KendallTauManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> CorrelationManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> MannWhitneyUManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> KendallTauManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> CorrelationManager.requiredKeywords
          The set of keywords required by this process manager.
 

Methods in sbrt.shell.mng.stat that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> MannWhitneyUManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> KendallTauManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> CorrelationManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> MannWhitneyUManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> KendallTauManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> CorrelationManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 

Uses of UnmodifiableSet in sbrt.shell.mng.utilities
 

Fields in sbrt.shell.mng.utilities declared as UnmodifiableSet
static UnmodifiableSet<java.lang.String> VariableParticipationManager.optionalKeywords
          The set of keywords understood, but not required, by instances of this class.
static UnmodifiableSet<java.lang.String> VectorComparisonManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> IntervalComparisonManager.optionalKeywords
          The set of keywords understood, but not required, by this process manager.
static UnmodifiableSet<java.lang.String> VariableParticipationManager.requiredKeywords
          The set of keywords required to be present in the ManagerInput objects supplied to instances of this class.
static UnmodifiableSet<java.lang.String> VectorComparisonManager.requiredKeywords
          The set of keywords required by this process manager.
static UnmodifiableSet<java.lang.String> IntervalComparisonManager.requiredKeywords
          The set of keywords required by this process manager.
 

Methods in sbrt.shell.mng.utilities that return UnmodifiableSet
 UnmodifiableSet<java.lang.String> VariableParticipationManager.getOptionalKeys()
          Returns the set of keywords the provided ManagerInput object does not necessarily have to contain.
 UnmodifiableSet<java.lang.String> VectorComparisonManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> IntervalComparisonManager.getOptionalKeys()
          Returns the set of keywords understood, but not required, by this process manager.
 UnmodifiableSet<java.lang.String> VariableParticipationManager.getRequiredKeys()
          Returns the set of keywords the provided ManagerInput object must contain.
 UnmodifiableSet<java.lang.String> VectorComparisonManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.
 UnmodifiableSet<java.lang.String> IntervalComparisonManager.getRequiredKeys()
          Returns the set of keywords required by this process manager.