Uses of Interface
sbrt.shell.text.Format

Packages that use Format
sbrt.shell.text Provides classes and interfaces for defining formats for basic objects. 
sbrt.shell.text.chem Provides classes and interfaces for defining formats for chemistry related objects. 
sbrt.shell.text.fba Provides classes and interfaces for defining formats for objects relevant to Flux Balance Analysis. 
sbrt.shell.text.math Provides classes and interfaces for defining formats for mathematical objects. 
 

Uses of Format in sbrt.shell.text
 

Subinterfaces of Format in sbrt.shell.text
 interface AppInputFileLineFormat
          This interface is used to represent the format of lines in process input files.
 interface BooleanFormat
          This interface is used to represent a format for boolean values.
 interface CollectionFormat<E>
          This interface is used to represent collection formats.
 interface DoubleFormat
          This interface is used to represent a format for double precision numbers.
 interface IntegerFormat
          This interface is used to represent a format for integers.
 interface LongFormat
          This interface is used to represent a format for longs.
 interface MapEntryFormat<K,V>
          This interface is used to represent formats for map entries.
 interface MapFormat<K,V>
          This interface is used to represent formats for maps.
 interface PercentFormat
          This interface is used to represent a format for percentages.
 interface SimpleFormat<T>
          This interface is used to represent simple formats.
 

Classes in sbrt.shell.text that implement Format
 class AbstractMapEntryFormat<K,V>
          This abstract class is a skeleton implementation of MapEntryFormat.
 class AbstractMapFormat<K,V>
          This abstract class is a skeleton implementation of MapFormat.
 class AppInputFileLineFormatVersion1
          This class is a concrete implementation of AppInputFileLineFormat.
 class BoolRelFormatV1<E>
          This interface is used to represent boolean relationship formats.
 class ColonMapEntryFormatV1<K,V>
          This class is a concrete implementation of MapEntryFormat.
 class ColonMapFormatV1<K,V>
          This class is a concrete implementation of MapFormat.
 class DoubleFormatV1
          This class is a concrete implementation of DoubleFormat.
 class DoubleFormatV2
          This class is a concrete implementation of DoubleFormat.
 class EqualsMapEntryFormatV1<K,V>
          This class is a concrete implementation of MapEntryFormat.
 class EqualsMapFormatV1<K,V>
          This class is a concrete implementation of MapFormat.
 class FileFormatFormat
          This class is used to represent formats for types of file formats.
 class IntegerFormatV1
          This class is a concrete implementation of IntegerFormat.
 class LongFormatV1
          This class is a concrete implementation of LongFormat.
 class NonEmptyStringFormat
          This class is used to define a format for String objects.
 class PercentFormatVersion1
          This class is a concrete implementation of PercentFormat.
 class SimpleListFormat<E>
          This interface is used to wrap ListFormat objects as SimpleFormat objects.
 class SimpleSetFormat<E>
          This interface is used to wrap ListFormat objects as SimpleFormat objects.
 class StringFormat
          This class is used to define a format for String objects.
 class TrueFalseFormat
          This class is used to define a format for true/false values.
 class YesNoFormat
          This class is used to define a format for yes/no values.
 

Uses of Format in sbrt.shell.text.chem
 

Subinterfaces of Format in sbrt.shell.text.chem
 interface CatalystFormat
          This interface is used to represent the formats of catalysts in chemical reactions.
 interface ChemSpeciesFormat
          This interface is used to represent the formats of chemical species.
 interface RxnNameFormat<T>
          This interface is used to represent formats for the names of chemical reactions.
 

Classes in sbrt.shell.text.chem that implement Format
 class CatalystFormatV1
          This class is a concrete implementation of CatalystFormat.
 class CatalystFormatV2
          This class is a concrete implementation of CatalystFormat.
 class ChemSpeciesFormatV1
          This class is a concrete implemenation of ChemSpeciesFormat.
 class IrrevRxnFormatV1
          This class is used to format irreversible chemical reactions.
 class RevRxnFormatV1
          This class is used to format reversible chemical reactions.
 class RxnNameFormatV1
          This class is a concrete implementation of RxnNameFormat.
 

Uses of Format in sbrt.shell.text.fba
 

Subinterfaces of Format in sbrt.shell.text.fba
 interface CatalystListFormat
          This interface is used to represent the formats of lists of catalyst names.
 interface CatalystSetFormat
          This interface is used to represent the formats of sets of enzyme names.
 interface ConstraintsFileLineFormat<E>
          This interface is used to represent formats for flux constraints files.
 interface FbaOptFileLineFormat
          This interface is used to represent formats of FBA optimization file lines.
 interface FluxCapFormat
          This interface is used to represent the formats of lines of flux cap-containing files.
 interface FluxomeSolutionFileLineFormat
          This interface is used to represent formats for solutions to the linear system of equations formed by a fluxome.
 interface FluxVectorFormat
          This interface is used to represent formats for flux vectors.
 interface RxnNameExprFormat<E extends MathExpr<S>,S>
          This interface is used to represent formats for mathematical expressions of reaction names.
 interface RxnNameListFormat
          This interface is used to represent the formats of collections of reaction names.
 interface RxnNameOrExprFormat
          This interface is used to represent formats for reaction names and mathematical expressions of reaction names.
 interface RxnNameSetFormat
          This interface is used to represent the formats of collections of reaction names.
 

Classes in sbrt.shell.text.fba that implement Format
 class CatalystListFormatV1
          This class is a concrete implemenation of CatalystListFormat.
 class CatalystSetFormatV1
          This class is a concrete implemenation of CatalystSetFormat.
 class CatalystVerifier
          This class is used to ensure catalysts exist in a given CatalyzedFluxome.
 class ChemSpeciesVerifier
          This class is used to ensure chemical species exist in a given Fluxome.
 class ConstraintsFileLineFormatV1
          This class is a concrete implemenation of ConstraintsFileLineFormat.
 class ConstraintsFileLineFormatV2
          This class is a concrete implemenation of ConstraintsFileLineFormat.
 class FbaOptFileLineFormatV1
          This class is a concrete implementation of FbaOptFileLineFormat.
 class FluxCapFormatV1
          This class is a concrete implementation of FluxCapFormat.
 class FluxomeSolFileLineFormatV1
          This class is a concrete implemenation of FluxomeSolutionFileLineFormat.
 class FluxVectorFormatV1
          This class is a concrete implemenation of FluxVectorFormat.
 class IrfFormatV1
          This class is used to format irreversible reaction fluxome files.
 class IrrevRxnFormatV2
          This class is used to format irreversible reactions for use in flux balance analysis.
 class MixedFluxomeFormatV1
          This class is used to format irreversible reaction fluxome files.
 class RevRxnFormatV2
          This class is used to format reversible reactions for use in flux balance analysis.
 class RxnFormatV1
          This class is used to format reactions for use in flux balance analysis.
 class RxnNameExprFormatV1
          This class is used to format linear combinations of reaction names.
 class RxnNameListFormatV1
          This class is a concrete implemenation of RxnNameListFormat.
 class RxnNameOrExprFormatV1
          This class is a concrete implemenation of RxnNameOrExprFormat.
 class RxnNameSetFormatV1
          This class is a concrete implemenation of RxnNameSetFormat.
 class RxnNameVerifier
          This class is used to ensure reaction names exist in a given Fluxome.
 

Uses of Format in sbrt.shell.text.math
 

Subinterfaces of Format in sbrt.shell.text.math
 interface CoeffFormat
          This interface is used to represent the format of coefficients of mathematical expressions.
 interface DirEdgeFormat<N>
          This interface is used to represent formats for the edges of directed graphs.
 interface IndexPairFormat<R,C>
          This interface is used to represent formats for pairs of indices.
 interface IntervalFormat
          This interface is used to represent formats for intervals.
 interface LinearCombFormat<V>
          This interface is used to represent formats for linear combinations.
 interface LinearCombTermFormat<V>
          This interface is used to represent the formats of terms from linear combinations.
 interface MathExprFormat<E extends MathExpr<V>,V>
          This interface is used to represent formats for linear combinations.
 interface MatrixElementFormat<R,C,E>
          This interface is used to represent formats for matrix elements.
 

Classes in sbrt.shell.text.math that implement Format
 class BoundedIntervalFormatV1
          This class is a concrete implementation of IntervalFormat.
 class CoeffFormatV1
          This class is a concrete implementation of CoeffFormat.
 class CoeffFormatV2
          This class is a concrete implementation of CoeffFormat.
 class DirEdgeFormatV1<N>
          This class is a concrete implementation of DirEdgeFormat.
 class IndexPairFormatV1<R,C>
          This class is a concrete implementation of IndexPairFormat.
 class IntervalFormatV1
          This class is a concrete implementation of IntervalFormat.
 class LinCombTermFormatV1<V>
          This class is a concrete implementation of LinearCombTermFormat.
 class LinCombTermFormatV2<V>
          This class is a concrete implementation of LinearCombTermFormat.
 class LinearCombFormatV1<V>
          This class is a concrete implementation of LinearCombFormat.
 class LinearCombFormatV2<V>
          This class is a concrete implementation of LinearCombFormat.
 class MatrixElementFormatV1<R,C>
          This class is a concrete implementation of MatrixElementFormat.
 class SenseFormat
          This class is used to represent formats of optimization senses.