GenomeHistory

Conant G. C. and Wagner A.

This is the home page for the GenomeHistory program. GenomeHistory is a program for locating duplicate genes in a genome and studying their evolution.

Citation

Conant, G.C., Wagner, A. (2002) GenomeHistory: a software tool and its application to fully sequenced genomes. Nucleic Acids Research 30, 1-10. [PDF]

Other Required packages:

GenomeHistory uses the Washington University BLAST implementation (http://blast.wustl.edu/blast/README.html) to screen for promising matches and clustalw ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalW/ to align candidate duplicate pairs. To run GenomeHistory, you will also need to download and install these two packages.

Downloading GenomeHistory:

GenomeHistory Binaries: G-zipped tar archive including binaries for Linux. Compiler was egcs-2.96-85, kernel 2.4.9-12smp.
GenomeHistory Source--gzip: G-zipped tar archive with GenomeHistory source
GenomeHistory Source--uncompressed: Same as above, but uncompressed.

Installing GenomeHistory:

For details on installing GenomeHistory, please consult the INSTALL file, also included in the tar archive.

GenomeHistory Documentation

Supplemental Data for NAR paper

Contact Information:

Further questions and problems should be reported to Gavin Conant: email: gconant@unm.edu

Disclaimer:

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

To receive a hard copy of the GNU General Public License write to the Free Software
Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA